RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA543299", tax_clade = "Opisthokonta" and tax_phylum = "Rotifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA543299 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4336485 4336485 PRJNA543299_P_NODE_15864_length_188_cov_2.201439_g15707_i0 PRJNA543299 15864 188 2.201439 4.13870532 Adineta vaga 104782 Rotifera other_Eukaryota 342 8.539999999999999e-90   NTclustered gi|259129963|gb|GQ398061.1| 104782 g15707 i0 99.468 73.7234042553192 188 1 100 0 1 188 4375 4188 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 13860 342 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
23461764 23461764 PRJNA543299_P_NODE_15579_length_190_cov_1.439716_g15422_i0 PRJNA543299 15579 190 1.439716 2.7354604 Adineta vaga 104782 Rotifera other_Eukaryota 318 1.46e-82   NTclustered gi|259129963|gb|GQ398061.1| 104782 g15422 i0 96.842 3.04210526315789 190 6 100 0 1 190 10395 10206 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 578 318 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
25344963 25344963 PRJNA543299_P_NODE_11000_length_225_cov_1.528409_g10843_i0 PRJNA543299 11000 225 1.528409 3.43892025 Adineta 104781 Rotifera other_Eukaryota 388 1.34e-103   NTclustered gi|1005055512|gb|KU860655.1| 1813164 g10843 i0 97.778 26.5733333333333 225 5 100 0 1 225 1479 1703 Adineta vaga complex sp. A JFF-2016 isolate H001 28S ribosomal RNA gene, partial sequence blastn 5979 388 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga complex sp. A JFF-2016
29825019 29825019 PRJNA543299_P_NODE_20531_length_167_cov_0.864407_g20374_i0 PRJNA543299 20531 167 0.864407 1.44355969 Rotaria sp. Silwood1 2762511 Rotifera other_Eukaryota 91.7 3.61e-20   NR CAF4993393.1 2762511 g20374 i0 72.7 5.92814371257485 55 15 98.8 0 2 166 2 56 CAF4993393.1 unnamed protein product, partial [Rotaria sp. Silwood1] diamond 990 91.7 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;