RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA543299", tax_clade = "Opisthokonta" and tax_phylum = "Hemichordata"

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tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA543299 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26729295 26729295 PRJNA543299_P_NODE_16121_length_187_cov_1.333333_g15964_i0 PRJNA543299 16121 187 1.333333 2.49333271 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 51.6 1.33e-5   NR XP_006821654.1 10224 g15964 i0 61.4 91.0588235294118 44 17 70.6 0 2 133 585 628 XP_006821654.1 PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase B-raf-like [Saccoglossus kowalevskii] diamond 17028 51.6 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
27804611 27804611 PRJNA543299_P_NODE_23564_length_163_cov_31.666667_g23407_i0 PRJNA543299 23564 163 31.666667 51.61666721 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 59.7 1.26e-8   NR XP_006821654.1 10224 g23407 i0 59.6 118.674846625767 52 21 95.7 0 158 3 585 636 XP_006821654.1 PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase B-raf-like [Saccoglossus kowalevskii] diamond 19344 59.7 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
30172610 30172610 PRJNA543299_P_NODE_19792_length_168_cov_7.445378_g19635_i0 PRJNA543299 19792 168 7.445378 12.50823504 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 80.1 9.34e-16   NR XP_006821654.1 10224 g19635 i0 70.4 1.92857142857143 54 16 96.4 0 168 7 575 628 XP_006821654.1 PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase B-raf-like [Saccoglossus kowalevskii] diamond 324 80.1 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;