RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA543299", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 8 ✖

tax_clade 1

  • Bacteria candidate phyla · 8 ✖

bioproject 1

  • PRJNA543299 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26793120 26793120 PRJNA543299_P_NODE_23381_length_164_cov_0.886957_g23224_i0 PRJNA543299 23381 164 0.886957 1.45460948 Minisyncoccota bacterium 2053589 Bacteria Bacteria 91.7 7.45e-20   NR HEX8993695.1 2053589 g23224 i0 85.2 0.98780487804878 54 8 98.8 0 1 162 259 312 HEX8993695.1 efflux RND transporter permease subunit [Candidatus Paceibacterota bacterium] diamond 162 91.7 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28088480 28088480 PRJNA543299_P_NODE_21205_length_166_cov_0.871795_g21048_i0 PRJNA543299 21205 166 0.871795 1.4471797 Minisyncoccota bacterium 2053589 Bacteria Bacteria 60.1 3.02e-9   NR MDI9407625.1 2053589 g21048 i0 62.7 0.921686746987952 51 15 92.2 1 6 158 94 140 MDI9407625.1 ERF family protein [Candidatus Paceibacterota bacterium] diamond 153 60.1 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28797873 28797873 PRJNA543299_P_NODE_23127_length_164_cov_0.886957_g22970_i0 PRJNA543299 23127 164 0.886957 1.45460948 Bacteria 2 Bacteria Bacteria 88.2 3.92e-19   NR HEY0907984.1 2053589 g22970 i0 72.2 1.97560975609756 54 15 98.8 0 162 1 74 127 HEY0907984.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 324 88.6 0.99548532731377 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29225527 29225527 PRJNA543299_P_NODE_24929_length_162_cov_0.902655_g24772_i0 PRJNA543299 24929 162 0.902655 1.4623011 Minisyncoccota bacterium 2053589 Bacteria Bacteria 41.6 0.0298   NR MDD5164994.1 2053589 g24772 i0 52 0.462962962962963 25 12 46.3 0 3 77 208 232 MDD5164994.1 LamG domain-containing protein [Candidatus Paceibacterota bacterium] diamond 75 41.6 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29477550 29477550 PRJNA543299_P_NODE_21410_length_166_cov_0.871795_g21253_i0 PRJNA543299 21410 166 0.871795 1.4471797 Minisyncoccota bacterium 2053589 Bacteria Bacteria 101 2.1599999999999998e-23   NR HVY35909.1 2053589 g21253 i0 85.5 1.98795180722892 55 8 99.4 0 166 2 224 278 HVY35909.1 amino acid--tRNA ligase-related protein [Candidatus Paceibacterota bacterium] diamond 330 101 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
30394305 30394305 PRJNA543299_P_NODE_24913_length_162_cov_0.902655_g24756_i0 PRJNA543299 24913 162 0.902655 1.4623011 Minisyncoccota bacterium 2053589 Bacteria Bacteria 85.9 1.07e-19   NR MFA5387739.1 2053589 g24756 i0 75.5 2.94444444444444 53 13 98.1 0 159 1 24 76 MFA5387739.1 M15 family metallopeptidase [Candidatus Paceibacterota bacterium] diamond 477 85.9 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
31657922 31657922 PRJNA543299_P_NODE_16717_length_184_cov_0.992593_g16560_i0 PRJNA543299 16717 184 0.992593 1.82637112 Minisyncoccota bacterium 2053589 Bacteria Bacteria 43.1 0.0108   NR MFA5387735.1 2053589 g16560 i0 58.1 0.505434782608696 31 13 50.5 0 2 94 187 217 MFA5387735.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 93 43.1 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
31879387 31879387 PRJNA543299_P_NODE_23017_length_164_cov_0.886957_g22860_i0 PRJNA543299 23017 164 0.886957 1.45460948 Minisyncoccota bacterium 2053589 Bacteria Bacteria 92.8 2.87e-20   NR HWO07563.1 2053589 g22860 i0 85.2 1.97560975609756 54 8 98.8 0 3 164 372 425 HWO07563.1 ABC transporter ATP-binding protein [Candidatus Paceibacterota bacterium] diamond 324 92.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;