RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA543299", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA543299 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27457308 27457308 PRJNA543299_P_NODE_25623_length_161_cov_0.910714_g25466_i0 PRJNA543299 25623 161 0.910714 1.46624954 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 90.1 4.46e-20   NR MBX4201254.1 2762014 g25466 i0 88.7 0.987577639751553 53 6 98.8 0 161 3 66 118 MBX4201254.1 SIMPL domain-containing protein [Candidatus Parcubacteria bacterium] diamond 159 90.1 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
32132836 32132836 PRJNA543299_P_NODE_22478_length_165_cov_0.879310_g22321_i0 PRJNA543299 22478 165 0.87931 1.4508615 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 116 1.42e-28   NR MEN9338184.1 2762014 g22321 i0 92.6 5.87272727272727 54 4 98.2 0 3 164 408 461 MEN9338184.1 ribonuclease j1, ribonuclease [Candidatus Parcubacteria bacterium] diamond 969 116 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;