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contig_metadata

33 rows where bioproject = "PRJNA541476", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 33 ✖

tax_phylum 1

  • Myxococcota · 33 ✖

tax_kingdom 1

bioproject 1

  • PRJNA541476 · 33 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5612257 5612257 PRJNA541476_P_NODE_14865_length_310_cov_1.962025_g14659_i0 PRJNA541476 14865 310 1.962025 6.0822775 root 1 Root_unresolved Root_unresolved 101 3.72e-23   NR MEK6194201.1 2026735 g14659 i0 76.2 4.10322580645161 63 15 61 0 307 119 216 278 MEK6194201.1 chorismate synthase [Deltaproteobacteria bacterium] diamond 1272 102 0.990196078431373 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
10047013 10047013 PRJNA541476_P_NODE_708_length_1335_cov_3.267829_g608_i0 PRJNA541476 708 1335 3.267829 43.62551715 Pendulispora 3375062 Bacteria Bacteria 1605 0   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g608 i0 88.533 155.755056179775 1343 130 99 20 3 1329 9852414 9853748 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 207933 1605 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
24734746 24734746 PRJNA541476_P_NODE_29420_length_251_cov_1.707865_g29214_i0 PRJNA541476 29420 251 1.707865 4.28674115 Myxococcota bacterium 2818507 Bacteria Bacteria 127 3.3999999999999997e-35   NR MEZ4236421.1 2818507 g29214 i0 70.7 4.87649402390438 82 24 98 0 5 250 35 116 MEZ4236421.1 peroxiredoxin [Myxococcota bacterium] diamond 1224 127 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
26744169 26744169 PRJNA541476_P_NODE_19681_length_283_cov_1.976190_g19475_i0 PRJNA541476 19681 283 1.97619 5.5926177 Bacteria 2 Bacteria Bacteria 98.2 2.81e-22   NR HUB07868.1 2026763 g19475 i0 54.3 1.95053003533569 92 40 97.5 1 1 276 113 202 HUB07868.1 SAM-dependent methyltransferase [Myxococcales bacterium] diamond 552 99 0.991919191919192 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27014515 27014515 PRJNA541476_P_NODE_10622_length_352_cov_1.275986_g10416_i0 PRJNA541476 10622 352 1.275986 4.49147072 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 67 4.07e-10   NR MBM4344005.1 2026735 g10416 i0 42.9 1.86647727272727 105 32 88.6 5 346 35 516 593 MBM4344005.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 657 67 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27029469 27029469 PRJNA541476_P_NODE_35562_length_246_cov_0.768786_g35356_i0 PRJNA541476 35562 246 0.768786 1.89121356 Pseudomonadati 3379134 Bacteria Bacteria 107 6.55e-27   NR HZI03337.1 1872627 g35356 i0 75.4 12.0609756097561 65 16 79.3 0 245 51 111 175 HZI03337.1 pyridoxal-phosphate dependent enzyme [Archangium sp.] diamond 2967 107 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
27172476 27172476 PRJNA541476_P_NODE_14242_length_315_cov_1.425620_g14036_i0 PRJNA541476 14242 315 1.42562 4.490703 Myxococcaceae bacterium 2484252 Bacteria Bacteria 54.3 8.11e-6   NR RYZ17952.1 2484252 g14036 i0 42.6 0.580952380952381 61 35 58.1 0 315 133 978 1038 RYZ17952.1 MAG: DUF3385 domain-containing protein, partial [Myxococcaceae bacterium] diamond 183 54.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
27172503 27172503 PRJNA541476_P_NODE_682_length_1363_cov_12.737209_g584_i0 PRJNA541476 682 1363 12.737209 173.60815867 Enhygromyxa salina 215803 Bacteria Bacteria 201 7.72e-56   NR WP_181234181.1 215803 g584 i0 38.3 1.84666177549523 400 211 83.2 18 53 1186 2 387 WP_181234181.1 phosphatidylinositol-specific phospholipase C [Enhygromyxa salina] diamond 2517 201 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Enhygromyxa Enhygromyxa salina
27235893 27235893 PRJNA541476_P_NODE_30603_length_250_cov_0.937853_g30397_i0 PRJNA541476 30603 250 0.937853 2.3446325 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 122 3.53e-32   NR MBN1905082.1 2026735 g30397 i0 68.3 2.904 82 26 98.4 0 3 248 160 241 MBN1905082.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [Deltaproteobacteria bacterium] diamond 726 122 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27330853 27330853 PRJNA541476_P_NODE_26843_length_257_cov_1.065217_g26637_i0 PRJNA541476 26843 257 1.065217 2.73760769 Polyangiaceae bacterium 2268199 Bacteria Bacteria 60.1 3.48e-8   NR HVU06157.1 2268199 g26637 i0 45.8 0.840466926070039 72 35 84 3 255 40 309 376 HVU06157.1 hypothetical protein [Polyangiaceae bacterium] diamond 216 60.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27425780 27425780 PRJNA541476_P_NODE_3363_length_635_cov_2.097865_g3170_i0 PRJNA541476 3363 635 2.097865 13.32144275 Myxococcaceae bacterium 2484252 Bacteria Bacteria 204 4.41e-63   NR HLT31923.1 2484252 g3170 i0 51 1.93700787401575 206 91 97.3 3 633 16 4 199 HLT31923.1 glutathione binding-like protein [Myxococcaceae bacterium] diamond 1230 204 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
27724928 27724928 PRJNA541476_P_NODE_4724_length_524_cov_1.771619_g4525_i0 PRJNA541476 4724 524 1.771619 9.28328356 Bacteria 2 Bacteria Bacteria 98.2 3.23e-20   NR TNF32683.1 2026735 g4525 i0 48.4 3.2175572519084 95 49 54.4 0 291 7 3 97 TNF32683.1 MAG: long-chain fatty acid--CoA ligase [Deltaproteobacteria bacterium] diamond 1686 99 0.991919191919192 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27930696 27930696 PRJNA541476_P_NODE_10125_length_359_cov_1.370629_g9919_i0 PRJNA541476 10125 359 1.370629 4.92055811 Myxococcota bacterium 2818507 Bacteria Bacteria 46.6 0.00619   NR HOE81825.1 2818507 g9919 i0 63.6 0.275766016713092 33 12 27.6 0 8 106 372 404 HOE81825.1 hypothetical protein [Myxococcota bacterium] diamond 99 46.6 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28657047 28657047 PRJNA541476_P_NODE_2487_length_747_cov_2.440653_g2302_i0 PRJNA541476 2487 747 2.440653 18.23167791 Haliangium ochraceum 80816 Bacteria Bacteria 49.7 0.00677   NR WP_053333319.1 80816 g2302 i0 38.6 0.281124497991968 70 43 28.1 0 205 414 4 73 WP_053333319.1 serine/threonine-protein kinase [Haliangium ochraceum] diamond 210 49.7 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium ochraceum
29067478 29067478 PRJNA541476_P_NODE_148_length_2405_cov_8.590480_g9_i6 PRJNA541476 148 2405 8.59048 206.601044 Polyangiaceae bacterium 2268199 Bacteria Bacteria 166 1.62e-41   NR MEZ4444961.1 2268199 g9 i6 41.5 0.309355509355509 248 124 30.1 8 1080 358 52 285 MEZ4444961.1 endonuclease/exonuclease/phosphatase family protein [Polyangiaceae bacterium] diamond 744 166 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
29603793 29603793 PRJNA541476_P_NODE_9630_length_367_cov_1.551020_g9424_i0 PRJNA541476 9630 367 1.55102 5.6922434 Myxococcales bacterium 2026763 Bacteria Bacteria 72 2.02e-12   NR MEA2697954.1 2026763 g9424 i0 36.4 0.989100817438692 121 68 92.4 3 22 360 42 161 MEA2697954.1 hypothetical protein [Myxococcales bacterium] diamond 363 72 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29666910 29666910 PRJNA541476_P_NODE_12850_length_327_cov_1.570866_g12644_i0 PRJNA541476 12850 327 1.570866 5.13673182 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 57 1e-6   NR MBL8785934.1 2026735 g12644 i0 42.5 0.669724770642202 73 14 42.2 2 326 189 601 672 MBL8785934.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 219 57 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29698454 29698454 PRJNA541476_P_NODE_28650_length_252_cov_1.340782_g28444_i0 PRJNA541476 28650 252 1.340782 3.37877064 Myxococcota bacterium 2818507 Bacteria Bacteria 76.6 4.14e-14   NR MBU1218566.1 2818507 g28444 i0 46.2 3.69047619047619 78 33 92.9 3 9 242 33 101 MBU1218566.1 hypothetical protein [Myxococcota bacterium] diamond 930 77 0.994805194805195 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29871684 29871684 PRJNA541476_P_NODE_751_length_1304_cov_6.076361_g647_i0 PRJNA541476 751 1304 6.076361 79.23574744 Bacteria 2 Bacteria Bacteria 121 1.16e-27   NR APR78274.1 888845 g647 i0 40.5 1.80828220858896 158 82 36.3 4 472 945 9 154 APR78274.1 Hypothetical protein A7982_03621 [Minicystis rosea] diamond 2358 121 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
29951516 29951516 PRJNA541476_P_NODE_21971_length_274_cov_1.313433_g21765_i0 PRJNA541476 21971 274 1.313433 3.59880642 Polyangiaceae bacterium 2268199 Bacteria Bacteria 53.9 6.15e-6   NR HMI84560.1 2268199 g21765 i0 51.2 0.448905109489051 41 20 44.9 0 255 133 49 89 HMI84560.1 putative metal-binding motif-containing protein [Polyangiaceae bacterium] diamond 123 53.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30014762 30014762 PRJNA541476_P_NODE_17891_length_292_cov_1.210046_g17685_i0 PRJNA541476 17891 292 1.210046 3.53333432 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 58.9 1.36e-7   NR MBU51753.1 2026735 g17685 i0 38.4 0.75 73 44 75 1 226 8 119 190 MBU51753.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 219 58.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30187442 30187442 PRJNA541476_P_NODE_5892_length_467_cov_1.441624_g5690_i0 PRJNA541476 5892 467 1.441624 6.73238408 Pseudomonadati 3379134 Bacteria Bacteria 52.4 1.63e-4   NR MBI5533646.1 2026735 g5690 i0 53.5 1.09850107066381 43 20 27.6 0 447 319 515 557 MBI5533646.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 513 52.8 0.992424242424242 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30267782 30267782 PRJNA541476_P_NODE_4672_length_527_cov_2.599119_g4473_i0 PRJNA541476 4672 527 2.599119 13.69735713 Labilithrix sp. 1971228 Bacteria Bacteria 65.9 5.81e-9   NR MFO0738222.1 1971228 g4473 i0 33.7 1.14990512333966 104 60 55.8 3 519 226 262 362 MFO0738222.1 thrombospondin type-1 domain-containing protein [Labilithrix sp.] diamond 606 65.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
30267783 30267783 PRJNA541476_P_NODE_4932_length_513_cov_1.470455_g4731_i0 PRJNA541476 4932 513 1.470455 7.54343415 Polyangiaceae bacterium 2268199 Bacteria Bacteria 50.1 0.00144   NR MCC6646482.1 2268199 g4731 i0 76 0.292397660818713 25 6 14.6 0 331 405 104 128 MCC6646482.1 hypothetical protein [Polyangiaceae bacterium] diamond 150 50.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30299459 30299459 PRJNA541476_P_NODE_28352_length_253_cov_0.866667_g28146_i0 PRJNA541476 28352 253 0.866667 2.19266751 Myxococcaceae bacterium 2484252 Bacteria Bacteria 86.7 1.49e-17   NR MCA2979551.1 2484252 g28146 i0 57.1 2.57312252964427 77 33 91.3 0 232 2 481 557 MCA2979551.1 DNA polymerase [Myxococcaceae bacterium] diamond 651 86.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
30299475 30299475 PRJNA541476_P_NODE_7812_length_405_cov_1.126506_g7608_i0 PRJNA541476 7812 405 1.126506 4.5623493 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 58.5 6.77e-7   NR MBM4371516.1 2026735 g7608 i0 30.1 0.985185185185185 133 78 98.5 4 405 7 486 603 MBM4371516.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 399 58.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30646353 30646353 PRJNA541476_P_NODE_20393_length_280_cov_2.371981_g20187_i0 PRJNA541476 20393 280 2.371981 6.6415468 Polyangium sp. 15x6 3042687 Bacteria Bacteria 72.4 1.73e-12   NR WP_282422496.1 3042687 g20187 i0 40.2 1.03928571428571 97 49 97.5 3 5 277 219 312 WP_282422496.1 DUF4419 domain-containing protein [Polyangium sp. 15x6] diamond 291 72.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium sp. 15x6
30741345 30741345 PRJNA541476_P_NODE_26654_length_257_cov_1.798913_g26448_i0 PRJNA541476 26654 257 1.798913 4.62320641 Bradymonadia bacterium 3121696 Bacteria Bacteria 60.1 3.53e-8   NR MFN3200873.1 3121696 g26448 i0 39.2 0.922178988326848 79 43 87.5 2 3 227 187 264 MFN3200873.1 DUF4215 domain-containing protein [Bradymonadia bacterium] diamond 237 60.1 1 Bacteria   Pseudomonadati Myxococcota Bradymonadia       Bradymonadia bacterium
31025831 31025831 PRJNA541476_P_NODE_2115_length_812_cov_1.048714_g1941_i0 PRJNA541476 2115 812 1.048714 8.51555768 Myxococcales bacterium 2026763 Bacteria Bacteria 80.5 6.280000000000002e-13   NR MSQ85130.1 2026763 g1941 i0 31.1 2.22783251231527 206 96 72 7 808 224 494 664 MSQ85130.1 hypothetical protein [Myxococcales bacterium] diamond 1809 80.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31025843 31025843 PRJNA541476_P_NODE_2655_length_725_cov_1.582822_g2468_i0 PRJNA541476 2655 725 1.582822 11.4754595 Polyangia bacterium 3058050 Bacteria Bacteria 117 7.78e-26   NR MFO8073381.1 3058050 g2468 i0 43.6 1.91586206896552 149 77 61.7 3 144 590 47 188 MFO8073381.1 VIT domain-containing protein [Polyangia bacterium] diamond 1389 117 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
32101003 32101003 PRJNA541476_P_NODE_22978_length_270_cov_1.527919_g22772_i0 PRJNA541476 22978 270 1.527919 4.1253813 Myxococcales bacterium 2026763 Bacteria Bacteria 51.6 5.33e-6   NR MCH8131519.1 2026763 g22772 i0 35.1 0.855555555555556 77 49 85.6 1 6 236 16 91 MCH8131519.1 RNA-binding protein [Myxococcales bacterium] diamond 231 51.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32795758 32795758 PRJNA541476_P_NODE_39520_length_242_cov_1.491124_g39314_i0 PRJNA541476 39520 242 1.491124 3.60852008 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 55.8 8.77e-7   NR MBM4343160.1 2026735 g39314 i0 63.2 0.471074380165289 38 14 47.1 0 236 123 357 394 MBM4343160.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 114 55.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32890329 32890329 PRJNA541476_P_NODE_5880_length_467_cov_1.901015_g5678_i0 PRJNA541476 5880 467 1.901015 8.87774005 Polyangiaceae bacterium 2268199 Bacteria Bacteria 114 5.21e-28   NR HEY1697337.1 2268199 g5678 i0 44.5 0.937901498929336 146 74 93.8 3 465 28 110 248 HEY1697337.1 glutathione S-transferase [Polyangiaceae bacterium] diamond 438 114 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;