RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA541476" and tax_phylum = "Fornicata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA541476 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26982923 26982923 PRJNA541476_P_NODE_36842_length_244_cov_1.830409_g36636_i0 PRJNA541476 36842 244 1.830409 4.46619796 Giardia intestinalis 5741 Fornicata other_Eukaryota 48.1 4.77e-4   NR ESU40914.1 5741 g36636 i0 41.7 0.885245901639344 72 33 86.1 5 8 217 362 426 ESU40914.1 Variant-specific surface protein, partial [Giardia intestinalis] diamond 216 48.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
27046292 27046292 PRJNA541476_P_NODE_13422_length_322_cov_1.686747_g13216_i0 PRJNA541476 13422 322 1.686747 5.43132534 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 90.9 2.74e-19   NR KAG9391426.1 201153 g13216 i0 47.1 1.9472049689441 104 44 96.9 1 1 312 20 112 KAG9391426.1 Hydrogenosomal membrane protein 31-like [Carpediemonas membranifera] diamond 627 90.9 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera
30551649 30551649 PRJNA541476_P_NODE_18893_length_287_cov_1.976636_g18687_i0 PRJNA541476 18893 287 1.976636 5.67294532 Giardia muris 5742 Fornicata other_Eukaryota 53.1 1.42e-5   NR TNJ30657.1 5742 g18687 i0 36.7 2.35191637630662 60 31 55.4 2 128 286 1123 1182 TNJ30657.1 High cysteine membrane protein [Giardia muris] diamond 675 53.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;