RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA541476" and tax_phylum = "Candidatus Altimarinota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA541476 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3060163 3060163 PRJNA541476_P_NODE_6603_length_440_cov_1.678474_g6399_i0 PRJNA541476 6603 440 1.678474 7.3852856 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 752 0   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g6399 i0 97.5 344.781818181818 440 11 100 0 1 440 1250844 1251283 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 151704 752 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
15811306 15811306 PRJNA541476_P_NODE_17413_length_294_cov_2.873303_g17207_i0 PRJNA541476 17413 294 2.873303 8.44751082 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 348 3.11e-91   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g17207 i0 88.136 24.3333333333333 295 32 100 3 1 294 1251839 1252131 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 7154 348 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
32195997 32195997 PRJNA541476_P_NODE_2818_length_701_cov_6.558917_g2627_i0 PRJNA541476 2818 701 6.558917 45.97800817 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 138 6.5499999999999995e-37   NR MCT4592035.1 2044595 g2627 i0 42.1 0.680456490727532 159 89 68 2 588 112 4 159 MCT4592035.1 NAD(P)H-dependent oxidoreductase [Candidatus Altimarinota bacterium] diamond 477 138 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;