RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA541476", tax_kingdom = "Fungi" and tax_phylum = "Cryptomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA541476 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13263123 13263123 PRJNA541476_P_NODE_831_length_1253_cov_9.357627_g721_i0 PRJNA541476 831 1253 9.357627 117.25106631 Paramicrosporidium saccamoebae 1246581 Fungi Fungi 287 9.76e-92   NR PJF16902.1 1246581 g721 i0 64.4 5.90662410215483 236 81 56.3 3 1084 380 24 257 PJF16902.1 hypothetical protein PSACC_03283 [Paramicrosporidium saccamoebae] diamond 7401 287 1 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae
27488726 27488726 PRJNA541476_P_NODE_31603_length_249_cov_1.198864_g31397_i0 PRJNA541476 31603 249 1.198864 2.98517136 Rozella allomycis CSF55 988480 Fungi Fungi 108 1.52e-26   NR RKP20367.1 988480 g31397 i0 63.4 0.987951807228916 82 30 98.8 0 247 2 40 121 RKP20367.1 DUF1295-domain-containing protein [Rozella allomycis CSF55] diamond 246 108 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
28657058 28657058 PRJNA541476_P_NODE_3747_length_598_cov_2.150476_g3553_i0 PRJNA541476 3747 598 2.150476 12.85984648 Paramicrosporidium saccamoebae 1246581 Fungi Fungi 104 3.95e-22   NR PJF19671.1 1246581 g3553 i0 33.9 0.857859531772575 171 104 85.3 3 42 551 353 515 PJF19671.1 Integral membrane protein [Paramicrosporidium saccamoebae] diamond 513 104 1 Eukaryota Opisthokonta Fungi Cryptomycota       Paramicrosporidium Paramicrosporidium saccamoebae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;