RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA541476", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA541476 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13262263 13262263 PRJNA541476_P_NODE_14411_length_314_cov_1.261411_g14205_i0 PRJNA541476 14411 314 1.261411 3.96083054 'Podocarpus nagi' fasciation phytoplasma 1612433 Bacteria Bacteria 309 1.58e-79   NTclustered gi|1205300520|gb|KX645669.1| 1612433 g14205 i0 84.566 88.8821656050955 311 48 99 0 2 312 52 362 'Podocarpus nagi' fasciation phytoplasma clone 001 translation elongation factor EF-TU gene, partial cds blastn 27909 309 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma 'Podocarpus nagi' fasciation phytoplasma
15146612 15146612 PRJNA541476_P_NODE_26412_length_258_cov_1.610811_g26206_i0 PRJNA541476 26412 258 1.610811 4.15589238 Mesomycoplasma 2923352 Bacteria Bacteria 449 7.13e-122   NTclustered gi|2713084492|gb|CP150431.1| 2100 g26206 i0 98.062 15 258 5 100 0 1 258 801141 800884 Mesomycoplasma hyorhinis strain Nahrain chromosome blastn 3870 449 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
18970035 18970035 PRJNA541476_P_NODE_12995_length_326_cov_1.225296_g12789_i0 PRJNA541476 12995 326 1.225296 3.99446496 Acholeplasma 2147 Bacteria Bacteria 52.8 0.031   NTclustered gi|1403529253|emb|LS483439.1| 2148 g12789 i0 90.244 0.377300613496933 41 2 12 2 32 71 338230 338191 Acholeplasma laidlawii strain NCTC10116 genome assembly, chromosome: 1 blastn 123 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma laidlawii
28103280 28103280 PRJNA541476_P_NODE_20705_length_279_cov_1.509709_g20499_i0 PRJNA541476 20705 279 1.509709 4.21208811 Bacillati 1783272 Bacteria Bacteria 87.4 6.44e-19   NR WP_016340484.1 216945 g20499 i0 56.1 1.39784946236559 66 29 71 0 80 277 1 66 WP_016340484.1 adenylate kinase [Spiroplasma syrphidicola] diamond 390 87.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma syrphidicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;