RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA541476", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA541476 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29067502 29067502 PRJNA541476_P_NODE_33988_length_247_cov_0.896552_g33782_i0 PRJNA541476 33988 247 0.896552 2.21448344 Bradymonadales bacterium 2099667 Bacteria Bacteria 82 5.83e-16   NR TVQ79090.1 2099667 g33782 i0 53.2 0.959514170040486 79 36 96 1 1 237 125 202 TVQ79090.1 MAG: ATP-dependent DNA helicase PcrA [Bradymonadales bacterium] diamond 237 82 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales     Bradymonadales bacterium
31135078 31135078 PRJNA541476_P_NODE_29435_length_251_cov_1.651685_g29229_i0 PRJNA541476 29435 251 1.651685 4.14572935 Acidobacteriota 57723 Bacteria Bacteria 78.6 9.65e-15   NR CAB1083184.1 334747 g29229 i0 47 1.9840637450199201 83 42 99.2 1 250 2 294 374 CAB1083184.1 hypothetical protein D1AOALGA4SA_10763 [Olavius algarvensis Delta 1 endosymbiont] diamond 498 78.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius algarvensis Delta 1 endosymbiont

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;