RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

21 rows where bioproject = "PRJNA541476" and tax_clade = "Stenosarchaea group"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 21 ✖

bioproject 1

  • PRJNA541476 · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1118448 1118448 PRJNA541476_P_NODE_40461_length_242_cov_0.887574_g40255_i0 PRJNA541476 40461 242 0.887574 2.14792908 Halobacteriales 2235 Archaea Archaea 431 2.4e-116   NTclustered gi|1041620905|dbj|AP017571.1| 29284 g40255 i0 98.76 10 242 3 100 0 1 242 18765 18524 Halorubrum trapanicum plasmid pCBA1232-02 DNA, complete genome, strain: CBA1232 blastn 2420 431 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum trapanicum
1784314 1784314 PRJNA541476_P_NODE_31822_length_249_cov_0.886364_g31616_i0 PRJNA541476 31822 249 0.886364 2.20704636 Salinirarus marinus 3068310 Archaea Archaea 169 2.1399999999999996e-37   NTclustered gi|2563036160|gb|CP132292.1| 3068310 g31616 i0 83.799 2.85943775100402 179 27 71 2 72 249 11519 11696 Haloferacaceae archaeon XH8 chromosome, complete genome blastn 712 169 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Salinirarus Salinirarus marinus
1784322 1784322 PRJNA541476_P_NODE_32062_length_249_cov_0.880682_g31856_i0 PRJNA541476 32062 249 0.880682 2.19289818 Halanaeroarchaeum sulfurireducens 1604004 Archaea Archaea 268 2.06e-67   NTclustered gi|933677909|gb|CP011564.1| 1604004 g31856 i0 87.288 11.7630522088353 236 29 95 1 13 248 1766287 1766521 Halanaeroarchaeum sulfurireducens strain M27-SA2, complete genome blastn 2929 268 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halanaeroarchaeum Halanaeroarchaeum sulfurireducens
3059910 3059910 PRJNA541476_P_NODE_35343_length_246_cov_0.890173_g35137_i0 PRJNA541476 35343 246 0.890173 2.18982558 Halospeciosus flavus 3032283 Archaea Archaea 244 3.42e-60   NTclustered gi|2490484842|gb|CP122312.1| 3032283 g35137 i0 84.585 12.5528455284553 253 31 100 7 1 246 596811 596560 Halospeciosus flavus strain XZGYJ-43 chromosome blastn 3088 244 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halospeciosus Halospeciosus flavus
4336040 4336040 PRJNA541476_P_NODE_37164_length_244_cov_0.912281_g36958_i0 PRJNA541476 37164 244 0.912281 2.22596564 Natronococcus occultus 29288 Archaea Archaea 228 3.409999999999999e-55   NTclustered gi|433671692|gb|CP003929.1| 694430 g36958 i0 84.034 4.68032786885246 238 36 97 2 6 242 3621317 3621081 Natronococcus occultus SP4, complete genome blastn 1142 228 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronococcus Natronococcus occultus
4336140 4336140 PRJNA541476_P_NODE_39784_length_242_cov_0.923077_g39578_i0 PRJNA541476 39784 242 0.923077 2.23384634 Salinibaculum marinum 3131993 Archaea Archaea 359 1.15e-94   NTclustered gi|2700494404|gb|CP147839.1| 3131993 g39578 i0 93.388 2.50826446280992 242 16 100 0 1 242 37895 38136 Salinibaculum marinum strain SYNS191 plasmid unnamed1, complete sequence blastn 607 359 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Salinibaculum Salinibaculum marinum
8161538 8161538 PRJNA541476_P_NODE_26427_length_258_cov_1.556757_g26221_i0 PRJNA541476 26427 258 1.556757 4.01643306 Natrinema thermotolerans 121872 Archaea Archaea 298 2.73e-76   NTclustered gi|1621090060|gb|CP031304.1| 121872 g26221 i0 91.981 5.75193798449612 212 17 82 0 47 258 946442 946653 Natrinema thermotolerans strain A29 plasmid unnamed6, complete sequence blastn 1484 298 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema thermotolerans
9437118 9437118 PRJNA541476_P_NODE_30588_length_250_cov_1.033898_g30382_i0 PRJNA541476 30588 250 1.033898 2.584745 Halolamina sp. CBA1230 1853690 Archaea Archaea 52.8 0.023   NTclustered gi|1861362334|gb|CP054587.1| 1853690 g30382 i0 100 0.112 28 0 11 0 25 52 2316153 2316126 Halolamina sp. CBA1230 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halolamina Halolamina sp. CBA1230
11987539 11987539 PRJNA541476_P_NODE_28330_length_253_cov_0.866667_g28124_i0 PRJNA541476 28330 253 0.866667 2.19266751 Halorussus vallis 2953749 Archaea Archaea 298 2.6699999999999998e-76   NTclustered gi|2263971171|gb|CP100004.1| 2953749 g28124 i0 97.159 0.695652173913043 176 5 70 0 2 177 76013 76188 Halorussus vallis strain XZYJT10 plasmid unnamed4, complete sequence blastn 176 298 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Halorussus Halorussus vallis
14537399 14537399 PRJNA541476_P_NODE_22272_length_273_cov_1.080000_g22066_i0 PRJNA541476 22272 273 1.08 2.9484 Haloferax volcanii 2246 Archaea Archaea 412 9.98e-111   NTclustered gi|2459776771|gb|CP104742.1| 2246 g22066 i0 94.096 1.9047619047619 271 16 99 0 1 271 275805 275535 Haloferax volcanii strain SVX82 plasmid pSVX82-1, complete sequence blastn 520 412 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax volcanii
15811693 15811693 PRJNA541476_P_NODE_31793_length_249_cov_0.886364_g31587_i0 PRJNA541476 31793 249 0.886364 2.20704636 Salinirarus marinus 3068310 Archaea Archaea 363 9.169999999999997e-96   NTclustered gi|2563036160|gb|CP132292.1| 3068310 g31587 i0 93.117 0.991967871485944 247 17 99 0 1 247 2444756 2444510 Haloferacaceae archaeon XH8 chromosome, complete genome blastn 247 363 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Salinirarus Salinirarus marinus
17085932 17085932 PRJNA541476_P_NODE_14394_length_314_cov_1.290456_g14188_i0 PRJNA541476 14394 314 1.290456 4.05203184 Halobellus limi 699433 Archaea Archaea 69.4 2.92e-7   NTclustered gi|1621075116|gb|CP031311.1| 699433 g14188 i0 87.302 5.4968152866242 63 5 19 2 252 311 1539057 1539119 Halobellus limi strain CGMCC 1.10331 chromosome, complete genome blastn 1726 69.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobellus Halobellus limi
26729278 26729278 PRJNA541476_P_NODE_31701_length_249_cov_0.886364_g31495_i0 PRJNA541476 31701 249 0.886364 2.20704636 Halonotius terrestris 2487750 Archaea Archaea 99.8 1.25e-24   NR WP_142978534.1 2487750 g31495 i0 84.6 0.626506024096386 52 8 62.7 0 246 91 90 141 WP_142978534.1 VOC family protein [Halonotius terrestris] diamond 156 99.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halonotius Halonotius terrestris
27187399 27187399 PRJNA541476_P_NODE_5042_length_507_cov_3.423963_g4841_i0 PRJNA541476 5042 507 3.423963 17.35949241 Methanomicrobiales 2191 Archaea Archaea 65.1 9.27e-9   NR HOI13930.1 90427 g4841 i0 33.1 2.70414201183432 154 83 89.3 6 3 455 123 259 HOI13930.1 kelch repeat-containing protein [Methanoculleus sp.] diamond 1371 65.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus sp.
27440687 27440687 PRJNA541476_P_NODE_36343_length_245_cov_0.901163_g36137_i0 PRJNA541476 36343 245 0.901163 2.20784935 Halobacteriales 2235 Archaea Archaea 148 2.67e-40   NR WP_103992728.1 699433 g36137 i0 88.9 16.8 81 9 99.2 0 3 245 135 215 WP_103992728.1 orc1/cdc6 family replication initiation protein [Halobellus limi] diamond 4116 148 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobellus Halobellus limi
27472063 27472063 PRJNA541476_P_NODE_24863_length_263_cov_2.378947_g24657_i0 PRJNA541476 24863 263 2.378947 6.25663061 root 1 Root_unresolved Root_unresolved 46.2 0.00288   NR MDD1700180.1 2052170 g24657 i0 39.3 6.58174904942966 84 37 94.7 4 250 2 331 401 MDD1700180.1 PKD domain-containing protein [Methanoregula sp.] diamond 1731 46.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.
27598430 27598430 PRJNA541476_P_NODE_24844_length_263_cov_2.731579_g24638_i0 PRJNA541476 24844 263 2.731579 7.18405277 root 1 Root_unresolved Root_unresolved 77.8 2.18e-14   NR WP_011322054.1 2257 g24638 i0 44 6.66159695817491 75 39 82.1 1 216 1 154 228 WP_011322054.1 bacterio-opsin activator domain-containing protein [Natronomonas pharaonis] diamond 1752 77.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas pharaonis
28088463 28088463 PRJNA541476_P_NODE_40845_length_238_cov_2.357576_g40639_i0 PRJNA541476 40845 238 2.357576 5.61103088 Methanoregula sp. 2052170 Archaea Archaea 45.8 0.00284   NR MDO9324427.1 2052170 g40639 i0 55 0.504201680672269 40 17 50.4 1 155 36 85 123 MDO9324427.1 TIGR03768 family metallophosphoesterase [Methanoregula sp.] diamond 120 45.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.
28435980 28435980 PRJNA541476_P_NODE_29106_length_252_cov_0.865922_g28900_i0 PRJNA541476 29106 252 0.865922 2.18212344 Haloferax denitrificans 35745 Archaea Archaea 127 2.1599999999999998e-32   NR WP_152421726.1 35745 g28900 i0 75 1 84 21 100 0 1 252 15 98 WP_152421726.1 EVE domain-containing protein [Haloferax denitrificans] diamond 252 127 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax denitrificans
32701432 32701432 PRJNA541476_P_NODE_37740_length_244_cov_0.900585_g37534_i0 PRJNA541476 37740 244 0.900585 2.1974274 Halococcoides sp. 2907509 Archaea Archaea 44.7 0.00629   NR MFB6163416.1 2907509 g37534 i0 40.4 0.639344262295082 52 30 62.7 1 162 10 146 197 MFB6163416.1 AAA family ATPase [Halococcoides sp.] diamond 156 44.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halococcoides Halococcoides sp.
32858952 32858952 PRJNA541476_P_NODE_38600_length_243_cov_0.917647_g38394_i0 PRJNA541476 38600 243 0.917647 2.22988221 Halonotius aquaticus 2216978 Archaea Archaea 142 1.36e-39   NR WP_120102868.1 2216978 g38394 i0 85 1.97530864197531 80 12 98.8 0 242 3 154 233 WP_120102868.1 ParB/RepB/Spo0J family partition protein [Halonotius aquaticus] diamond 480 142 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halonotius Halonotius aquaticus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;