RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA540466" and tax_phylum = "Cercozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA540466 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23460475 23460475 PRJNA540466_S_NODE_64179_length_240_cov_2.778443_g63630_i0 PRJNA540466 64179 240 2.778443 6.6682632 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 187 5.6699999999999984e-43   NTclustered gi|238617605|gb|FJ973380.1| 45107 g63630 i0 95 21.1458333333333 120 5 50 1 1 119 1497 1616 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 5075 187 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
27330830 27330830 PRJNA540466_S_NODE_63623_length_242_cov_0.911243_g63074_i0 PRJNA540466 63623 242 0.911243 2.20520806 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 80.9 1.37e-15   NR MES1909201.1 1215613 g63074 i0 50 0.966942148760331 78 37 96.7 1 2 235 732 807 MES1909201.1 hypothetical protein [Cercozoa sp. M6MM] diamond 234 80.9 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
31752918 31752918 PRJNA540466_S_NODE_64477_length_239_cov_3.120482_g63928_i0 PRJNA540466 64477 239 3.120482 7.45795198 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 63.2 1.59e-10   NR MES1912234.1 1215613 g63928 i0 61 1.02928870292887 41 14 51.5 1 219 97 82 120 MES1912234.1 hypothetical protein [Cercozoa sp. M6MM] diamond 246 63.2 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;