RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA540466" and tax_phylum = "Blastocladiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA540466 · 10 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4334803 4334803 PRJNA540466_S_NODE_18104_length_414_cov_1.870968_g17555_i0 PRJNA540466 18104 414 1.870968 7.74580752 Coelomomyces lativittatus 945690 Fungi Fungi 256 1.2399999999999998e-85   NR KAJ1500207.1 945690 g17555 i0 93.8 0.934782608695652 129 8 93.5 0 403 17 24 152 KAJ1500207.1 nucleoside diphosphate kinase [Coelomomyces lativittatus] diamond 387 256 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Coelomomycetaceae Coelomomyces Coelomomyces lativittatus
26888248 26888248 PRJNA540466_S_NODE_9361_length_548_cov_3.153684_g8844_i0 PRJNA540466 9361 548 3.153684 17.28218832 Coelomomyces lativittatus 945690 Fungi Fungi 80.9 3.63e-15   NR KAJ1509200.1 945690 g8844 i0 56.7 0.366788321167883 67 29 36.7 0 25 225 106 172 KAJ1509200.1 GTP-binding protein [Coelomomyces lativittatus] diamond 201 80.9 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Coelomomycetaceae Coelomomyces Coelomomyces lativittatus
27598421 27598421 PRJNA540466_S_NODE_60804_length_245_cov_2.790698_g60255_i0 PRJNA540466 60804 245 2.790698 6.8372101 Eukaryota 2759 Fungi Fungi 85.9 2.79e-19   NR KAI9221742.1 64508 g60255 i0 65.6 3.71020408163265 61 21 74.7 0 1 183 66 126 KAI9221742.1 profilin [Blastocladiella britannica] diamond 909 85.9 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
28341137 28341137 PRJNA540466_S_NODE_52026_length_260_cov_1.449198_g51477_i0 PRJNA540466 52026 260 1.449198 3.7679148 Paraphysoderma sedebokerense 1500003 Fungi Fungi 50.4 5.09e-5   NR KAI9138812.1 1500003 g51477 i0 35.5 2.65384615384615 76 48 87.7 1 2 229 23 97 KAI9138812.1 emp24/gp25L/p24 family/GOLD-domain-containing protein [Paraphysoderma sedebokerense] diamond 690 50.4 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
28577003 28577003 PRJNA540466_S_NODE_6647_length_617_cov_4.137868_g6189_i0 PRJNA540466 6647 617 4.137868 25.53064556 Fungi 4751 Fungi Fungi 272 3.229999999999999e-87   NR KAI9151028.1 1313167 g6189 i0 63.9 8.80064829821718 202 64 93.8 1 613 35 186 387 KAI9151028.1 Serine/threonine-protein phosphatase 2A activator 2 [Blastocladiella emersonii ATCC 22665] diamond 5430 274 0.992700729927007 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
28766434 28766434 PRJNA540466_S_NODE_2447_length_814_cov_5.897436_g2153_i0 PRJNA540466 2447 814 5.897436 48.00512904 Fungi 4751 Fungi Fungi 169 3.52e-45   NR KAI9137930.1 1500003 g2153 i0 37.3 11.7088452088452 244 148 89.6 2 7 735 207 446 KAI9137930.1 ZPR1 zinc-finger domain-containing protein [Paraphysoderma sedebokerense] diamond 9531 170 0.994117647058824 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
29067446 29067446 PRJNA540466_S_NODE_32328_length_318_cov_1.485714_g31779_i0 PRJNA540466 32328 318 1.485714 4.72457052 Blastocladiella britannica 64508 Fungi Fungi 107 3.2900000000000004e-27   NR KAI9221742.1 64508 g31779 i0 64 2.43396226415094 86 31 81.1 0 59 316 1 86 KAI9221742.1 profilin [Blastocladiella britannica] diamond 774 107 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
30741323 30741323 PRJNA540466_S_NODE_64154_length_240_cov_2.994012_g63605_i0 PRJNA540466 64154 240 2.994012 7.1856288 Blastocladiella britannica 64508 Fungi Fungi 44.7 0.00599   NR KAI9223396.1 64508 g63605 i0 40.8 1.9375 49 29 61.3 0 11 157 50 98 KAI9223396.1 C2 domain-containing protein, partial [Blastocladiella britannica] diamond 465 44.7 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
31198157 31198157 PRJNA540466_S_NODE_40275_length_289_cov_2.023148_g39726_i0 PRJNA540466 40275 289 2.023148 5.84689772 Eukaryota 2759 Fungi Fungi 97.1 3.09e-23   NR KAJ1500207.1 945690 g39726 i0 60 2.80276816608997 70 28 72.7 0 9 218 83 152 KAJ1500207.1 nucleoside diphosphate kinase [Coelomomyces lativittatus] diamond 810 97.1 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Coelomomycetaceae Coelomomyces Coelomomyces lativittatus
32195969 32195969 PRJNA540466_S_NODE_49558_length_265_cov_2.031250_g49009_i0 PRJNA540466 49558 265 2.03125 5.3828125 Blastocladiella emersonii ATCC 22665 1313167 Fungi Fungi 55.5 2.54e-7   NR KAI9188049.1 1313167 g49009 i0 32.9 1.94716981132075 85 54 94 2 12 260 42 125 KAI9188049.1 Extended synaptotagmin-3 [Blastocladiella emersonii ATCC 22665] diamond 516 55.5 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;