RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA540466", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA540466 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1783621 1783621 PRJNA540466_S_NODE_5842_length_644_cov_5.035026_g5405_i0 PRJNA540466 5842 644 5.035026 32.42556744 Bacteriovoracia bacterium 3058048 Bacteria Bacteria 199 8.92e-59   NR MFP5457766.1 3058048 g5405 i0 67.6 1.91925465838509 139 45 64.8 0 642 226 249 387 MFP5457766.1 cystathionine gamma-synthase [Bacteriovoracia bacterium] diamond 1236 199 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia       Bacteriovoracia bacterium
13261868 13261868 PRJNA540466_S_NODE_40091_length_290_cov_0.935484_g39542_i0 PRJNA540466 40091 290 0.935484 2.7129036 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 74.3 6.07e-15   NR MEZ4815522.1 3034175 g39542 i0 56.1 0.589655172413793 57 25 59 0 3 173 1 57 MEZ4815522.1 hypothetical protein [Bdellovibrionota bacterium] diamond 171 74.3 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
27962230 27962230 PRJNA540466_S_NODE_43105_length_281_cov_1.495192_g42556_i0 PRJNA540466 43105 281 1.495192 4.20148952 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 94.7 1.09e-22   NR MCB0368029.1 2053517 g42556 i0 45.7 0.98220640569395 92 50 98.2 0 4 279 8 99 MCB0368029.1 hypothetical protein [Bdellovibrionales bacterium] diamond 276 94.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28341115 28341115 PRJNA540466_S_NODE_18986_length_405_cov_6.692771_g18437_i0 PRJNA540466 18986 405 6.692771 27.10572255 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 47 0.00641   NR MBS1960681.1 2053517 g18437 i0 84 0.955555555555556 25 4 18.5 0 383 309 433 457 MBS1960681.1 dihydropyrimidinase [Bdellovibrionales bacterium] diamond 387 47 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29951484 29951484 PRJNA540466_S_NODE_4011_length_718_cov_2.537984_g3644_i0 PRJNA540466 4011 718 2.537984 18.22272512 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 143 8.57e-39   NR MCB0371038.1 2053517 g3644 i0 48.6 0.584958217270195 140 72 58.5 0 673 254 44 183 MCB0371038.1 cation transporting ATPase C-terminal domain-containing protein [Bdellovibrionales bacterium] diamond 420 143 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30930977 30930977 PRJNA540466_S_NODE_47774_length_269_cov_1.964286_g47225_i0 PRJNA540466 47774 269 1.964286 5.28392934 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 76.6 3.98e-16   NR MBY0518738.1 2081706 g47225 i0 89.7 0.434944237918216 39 4 43.5 0 174 58 1 39 MBY0518738.1 DUF2933 domain-containing protein [Bacteriovoracaceae bacterium] diamond 117 76.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;