RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA540466", tax_kingdom = "Fusobacteriati" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA540466 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10712084 10712084 PRJNA540466_S_NODE_34049_length_311_cov_1.310924_g33500_i0 PRJNA540466 34049 311 1.310924 4.07697364 Leptotrichia hofstadii 157688 Bacteria Bacteria 532 8.51e-147   NTclustered gi|1708566027|dbj|AP019823.1| 157688 g33500 i0 99.656 381.418006430868 291 1 94 0 21 311 2454664 2454374 Leptotrichia hofstadii JCM16775 DNA, complete genome blastn 118621 532 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii
28151887 28151887 PRJNA540466_S_NODE_945_length_1033_cov_24.394792_g811_i0 PRJNA540466 945 1033 24.394792 251.99820136 Fusobacterium periodonticum 860 Bacteria Bacteria 50.4 0.00402   NR WP_204640299.1 860 g811 i0 28.3 1.12681510164569 145 91 40.7 4 295 714 87 223 WP_204640299.1 cell division protein FtsZ [Fusobacterium periodonticum] diamond 1164 50.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;