RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA540466", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 6 ✖

tax_kingdom 1

  • Bacillati · 6 ✖

bioproject 1

  • PRJNA540466 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3669758 3669758 PRJNA540466_S_NODE_42663_length_282_cov_2.210526_g42114_i0 PRJNA540466 42663 282 2.210526 6.23368332 Mesomycoplasma 2923352 Bacteria Bacteria 521 1.6499999999999996e-143   NTclustered gi|2713084492|gb|CP150431.1| 2100 g42114 i0 100 99.2943262411348 282 0 100 0 1 282 696798 696517 Mesomycoplasma hyorhinis strain Nahrain chromosome blastn 28001 521 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
4946586 4946586 PRJNA540466_S_NODE_23964_length_364_cov_1.597938_g23415_i0 PRJNA540466 23964 364 1.597938 5.81649432 Mesomycoplasma 2923352 Bacteria Bacteria 562 1.29e-155   NTclustered gi|1720621726|gb|CP035041.1| 2100 g23415 i0 99.674 23.6703296703297 307 1 84 0 47 353 791156 790850 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 8616 562 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
10712167 10712167 PRJNA540466_S_NODE_43789_length_279_cov_1.946602_g43240_i0 PRJNA540466 43789 279 1.946602 5.43101958 Haploplasma axanthum 29552 Bacteria Bacteria 52.8 0.026   NTclustered gi|1563809587|emb|LR215048.1| 29552 g43240 i0 100 0.100358422939068 28 0 10 0 208 235 1322296 1322323 Acholeplasma axanthum strain NCTC10138 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Haploplasma Haploplasma axanthum
20244914 20244914 PRJNA540466_S_NODE_40196_length_289_cov_2.773148_g39647_i0 PRJNA540466 40196 289 2.773148 8.01439772 Mesomycoplasma 2923352 Bacteria Bacteria 534 2.18e-147   NTclustered gi|1720621726|gb|CP035041.1| 2100 g39647 i0 100 16 289 0 100 0 1 289 386917 387205 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 4624 534 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
26793050 26793050 PRJNA540466_S_NODE_13401_length_473_cov_3.022500_g12857_i0 PRJNA540466 13401 473 3.0225 14.296425 Mycoplasmatota bacterium 2231116 Bacteria Bacteria 97.4 1.9e-21   NR MCI5789847.1 2231116 g12857 i0 41.3 3.16490486257928 121 67 76.7 3 463 101 128 244 MCI5789847.1 ATP-binding cassette domain-containing protein [Mycoplasmatota bacterium] diamond 1497 97.4 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium
31767809 31767809 PRJNA540466_S_NODE_157_length_1592_cov_16.177749_g130_i0 PRJNA540466 157 1592 16.177749 257.54976408 root 1 Root_unresolved Root_unresolved 49.3 0.0163   NR WP_052007440.1 2095 g130 i0 31.2 0.757537688442211 109 64 19.2 2 923 618 4 108 WP_052007440.1 hypothetical protein [Mycoplasma capricolum] diamond 1206 49.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma capricolum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;