RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA540466", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 8 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 8 ✖

bioproject 1

  • PRJNA540466 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4335236 4335236 PRJNA540466_S_NODE_6924_length_609_cov_4.156716_g6456_i0 PRJNA540466 6924 609 4.156716 25.31440044 Pseudomonadati 3379134 Bacteria Bacteria 242 5.35e-76   NR MDB2506155.1 2026772 g6456 i0 60 4.5615763546798 185 67 91.1 2 4 558 158 335 MDB2506155.1 UDP-glucose--hexose-1-phosphate uridylyltransferase [Opitutales bacterium] diamond 2778 242 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
27867370 27867370 PRJNA540466_S_NODE_20865_length_388_cov_2.222222_g20316_i0 PRJNA540466 20865 388 2.222222 8.62222136 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 45.4 0.0129   NR HZR21210.1 2499141 g20316 i0 30.6 2.4819587628866 98 57 68 4 42 305 110 206 HZR21210.1 DUF4203 domain-containing protein [Verrucomicrobiia bacterium] diamond 963 45.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
28435946 28435946 PRJNA540466_S_NODE_49686_length_265_cov_1.520833_g49137_i0 PRJNA540466 49686 265 1.520833 4.03020745 Luteolibacter sp. SL25 1962973 Bacteria Bacteria 43.9 0.00433   NR WP_267675078.1 2995170 g49137 i0 43.2 1.49433962264151 44 25 49.8 0 253 122 59 102 WP_267675078.1 hypothetical protein [Luteolibacter sp. SL250] diamond 396 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
30046098 30046098 PRJNA540466_S_NODE_57491_length_250_cov_1.305085_g56942_i0 PRJNA540466 57491 250 1.305085 3.2627125 Chthoniobacter sp. 2510640 Bacteria Bacteria 46.2 0.00241   NR MEA3187364.1 2510640 g56942 i0 56.4 0.468 39 17 46.8 0 228 112 410 448 MEA3187364.1 hypothetical protein [Chthoniobacter sp.] diamond 117 46.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
30394229 30394229 PRJNA540466_S_NODE_30173_length_327_cov_5.417323_g29624_i0 PRJNA540466 30173 327 5.417323 17.71464621 Rariglobus sp. 2706526 Bacteria Bacteria 83.6 1.27e-17   NR MET0262179.1 2706526 g29624 i0 52.5 0.559633027522936 61 29 56 0 2 184 101 161 MET0262179.1 pyridoxamine 5'-phosphate oxidase family protein [Rariglobus sp.] diamond 183 83.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Rariglobus Rariglobus sp.
31324990 31324990 PRJNA540466_S_NODE_21435_length_383_cov_2.374194_g20886_i0 PRJNA540466 21435 383 2.374194 9.09316302 root 1 Root_unresolved Root_unresolved 44.7 0.0223   NR MDB4384299.1 2562705 g20886 i0 53.8 1.19843342036554 39 17 30.5 1 2 118 163 200 MDB4384299.1 alpha-ketoglutarate-dependent dioxygenase AlkB [Akkermansiaceae bacterium] diamond 459 44.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
32195962 32195962 PRJNA540466_S_NODE_44978_length_276_cov_1.517241_g44429_i0 PRJNA540466 44978 276 1.517241 4.18758516 Opitutaceae bacterium 2006848 Bacteria Bacteria 54.7 2.62e-6   NR HTB80579.1 2006848 g44429 i0 40.6 2.29347826086957 69 39 72.8 1 253 53 199 267 HTB80579.1 pyrroline-5-carboxylate reductase [Opitutaceae bacterium] diamond 633 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
32210893 32210893 PRJNA540466_S_NODE_7918_length_582_cov_7.267191_g7427_i0 PRJNA540466 7918 582 7.267191 42.29505162 Candidatus Udaeobacter 1921511 Bacteria Bacteria 110 3.9e-25   NR HWY40880.1 2201154 g7427 i0 46.2 3.68041237113402 119 62 61.3 2 1 357 213 329 HWY40880.1 transaldolase [Chthoniobacterales bacterium] diamond 2142 110 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;