RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA540466", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA540466 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26982875 26982875 PRJNA540466_S_NODE_30082_length_328_cov_1.839216_g29533_i0 PRJNA540466 30082 328 1.839216 6.03262848 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 50.8 1.5e-4   NR MBO7654131.1 2212473 g29533 i0 46.4 1.02439024390244 56 27 51.2 2 83 250 26 78 MBO7654131.1 autotransporter-associated beta strand repeat-containing protein [Kiritimatiellia bacterium] diamond 336 50.8 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
32291257 32291257 PRJNA540466_S_NODE_42759_length_282_cov_1.473684_g42210_i0 PRJNA540466 42759 282 1.473684 4.15578888 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 44.3 0.0167   NR MBR4354806.1 2212473 g42210 i0 64.5 0.329787234042553 31 11 33 0 3 95 569 599 MBR4354806.1 M3 family metallopeptidase [Kiritimatiellia bacterium] diamond 93 44.3 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;