RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA540466", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Absconditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA540466 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28688682 28688682 PRJNA540466_S_NODE_66127_length_234_cov_2.527950_g65578_i0 PRJNA540466 66127 234 2.52795 5.915403 Candidatus Vampirococcus lugosii 2789015 Bacteria Bacteria 73.9 3.47e-13   NR WP_338032118.1 2789015 g65578 i0 52 0.961538461538462 75 31 89.7 1 210 1 104 178 WP_338032118.1 DEAD/DEAH box helicase family protein [Candidatus Vampirococcus lugosii] diamond 225 73.9 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota       Vampirococcus Candidatus Vampirococcus lugosii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;