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contig_metadata

19 rows where bioproject = "PRJNA534016" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 19 ✖

tax_clade 1

bioproject 1

  • PRJNA534016 · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1118183 1118183 PRJNA534016_P_NODE_3641_length_429_cov_7.117978_g3551_i0 PRJNA534016 3641 429 7.117978 30.53612562 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 159 2.37e-34   NTclustered gi|2311026826|gb|OP554785.1| 4798 g3551 i0 88.722 33.3263403263403 133 11 30 3 301 429 497 365 Pythium hydnosporum isolate R-28 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14297 159 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium hydnosporum
4334345 4334345 PRJNA534016_P_NODE_10364_length_276_cov_1.807882_g10274_i0 PRJNA534016 10364 276 1.807882 4.98975432 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 226 1.41e-54   NTclustered gi|2794923360|ref|XM_067881981.1| 164328 g10274 i0 89.011 66.2463768115942 182 20 66 0 91 272 1 182 Phytophthora ramorum Calmodulin (KRP23_11430), partial mRNA blastn 18284 226 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
7496353 7496353 PRJNA534016_P_NODE_12086_length_263_cov_1.100000_g11996_i0 PRJNA534016 12086 263 1.1 2.893 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 200 8.099999999999998e-47   NTclustered gi|195970350|gb|EU880228.1| 67593 g11996 i0 80.46 79.2167300380228 261 51 99 0 1 261 414 154 Phytophthora sojae calmodulin (CAM1) mRNA, complete cds blastn 20834 200 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
14536312 14536312 PRJNA534016_P_NODE_16212_length_246_cov_0.849711_g16122_i0 PRJNA534016 16212 246 0.849711 2.09028906 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 156 1.65e-33   NTclustered gi|166038151|emb|CU349819.1| 100861 g16122 i0 78.723 31.7682926829268 235 48 95 2 13 246 796 563 Aphanomyces euteiches cDNA blastn 7815 156 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
17084931 17084931 PRJNA534016_P_NODE_16334_length_245_cov_1.267442_g16244_i0 PRJNA534016 16334 245 1.267442 3.1052329 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 169 2.1e-37   NTclustered gi|166035576|emb|CU354455.1| 100861 g16244 i0 88.489 34.4979591836735 139 16 57 0 107 245 842 704 Aphanomyces euteiches cDNA blastn 8452 169 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
18359047 18359047 PRJNA534016_P_NODE_2635_length_503_cov_2.023256_g2545_i0 PRJNA534016 2635 503 2.023256 10.17697768 Achlya ambisexualis 4768 SAR_Eukaryotes SAR_Eukaryotes 348 5.6e-91   NTclustered gi|22086549|gb|AF402100.1| 4768 g2545 i0 80.042 69.272365805169 476 90 94 5 19 491 1424 951 Achlya ambisexualis isolate JS854 heat shock protein Hsp90 mRNA, complete cds blastn 34844 348 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya ambisexualis
18359082 18359082 PRJNA534016_P_NODE_5375_length_358_cov_1.421053_g5285_i0 PRJNA534016 5375 358 1.421053 5.08736974 Phytophthora cactorum 29920 SAR_Eukaryotes SAR_Eukaryotes 196 7.53e-61   NR KAG6952591.1 29920 g5285 i0 79.6 11.8743016759777 113 23 94.7 0 348 10 1 113 KAG6952591.1 hypothetical protein JG687_00012914, partial [Phytophthora cactorum] diamond 4251 196 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
26776435 26776435 PRJNA534016_P_NODE_9541_length_283_cov_0.961905_g9451_i0 PRJNA534016 9541 283 0.961905 2.72219115 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 102 5.0799999999999996e-24   NR CCA17716.1 890382 g9451 i0 50 4.98233215547703 94 47 99.6 0 2 283 215 308 CCA17716.1 transcription elongation factor putative [Albugo laibachii Nc14] diamond 1410 102 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
27014443 27014443 PRJNA534016_P_NODE_10882_length_272_cov_1.437186_g10792_i0 PRJNA534016 10882 272 1.437186 3.90914592 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 56.6 6.92e-7   NR KAF0715055.1 120398 g10792 i0 45.3 0.584558823529412 53 29 58.5 0 35 193 373 425 KAF0715055.1 hypothetical protein As57867_003581, partial [Aphanomyces stellatus] diamond 159 56.6 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
27345805 27345805 PRJNA534016_P_NODE_9143_length_286_cov_1.197183_g9053_i0 PRJNA534016 9143 286 1.197183 3.42394338 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 79.3 8.21e-15   NR RQM14163.1 112090 g9053 i0 47.6 3.49300699300699 82 43 86 0 248 3 233 314 RQM14163.1 hypothetical protein B5M09_009726 [Aphanomyces astaci] diamond 999 80.1 0.990012484394507 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
28025425 28025425 PRJNA534016_P_NODE_8445_length_292_cov_1.853881_g8355_i0 PRJNA534016 8445 292 1.853881 5.41333252 Phytophthora palmivora 4796 SAR_Eukaryotes SAR_Eukaryotes 47.8 8.14e-4   NR POM72966.1 4796 g8355 i0 49 0.503424657534247 49 25 50.3 0 208 62 112 160 POM72966.1 26S proteasome non-ATPase regulatory subunit [Phytophthora palmivora] diamond 147 47.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora
29840001 29840001 PRJNA534016_P_NODE_4571_length_386_cov_2.099042_g4481_i0 PRJNA534016 4571 386 2.099042 8.10230212 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 256 1.45e-80   NR DBA03280.1 4803 g4481 i0 98.4 50.7124352331606 128 2 99.5 0 3 386 4 131 DBA03280.1 TPA: hypothetical protein N0F65_011639 [Lagenidium giganteum] diamond 19575 256 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
29888418 29888418 PRJNA534016_P_NODE_5091_length_367_cov_1.309524_g5001_i0 PRJNA534016 5091 367 1.309524 4.80595308 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 75.9 3.56e-14   NR KAG1699552.1 4784 g5001 i0 51.4 1.71662125340599 74 34 58.9 2 6 221 115 188 KAG1699552.1 hypothetical protein DVH05_012963 [Phytophthora capsici] diamond 630 75.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
30109358 30109358 PRJNA534016_P_NODE_6132_length_338_cov_1.950943_g6042_i0 PRJNA534016 6132 338 1.950943 6.59418734 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 142 1.23e-36   NR KAG1709295.1 4784 g6042 i0 69.2 5.53846153846154 104 28 92.3 1 1 312 607 706 KAG1709295.1 hypothetical protein DVH05_019938 [Phytophthora capsici] diamond 1872 142 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
30471995 30471995 PRJNA534016_P_NODE_12453_length_260_cov_1.320856_g12363_i0 PRJNA534016 12453 260 1.320856 3.4342256 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 113 6.15e-30   NR KAI9998566.1 4787 g12363 i0 69.8 5.95384615384615 86 26 99.2 0 259 2 36 121 KAI9998566.1 hypothetical protein PInf_003115 [Phytophthora infestans] diamond 1548 113 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
31009001 31009001 PRJNA534016_P_NODE_18174_length_241_cov_0.916667_g18084_i0 PRJNA534016 18174 241 0.916667 2.20916747 root 1 Root_unresolved Root_unresolved 61.6 8.16e-10   NR OQR90783.1 74557 g18084 i0 54.4 1.40663900414938 57 25 69.7 1 68 235 5 61 OQR90783.1 hypothetical protein THRCLA_22512 [Thraustotheca clavata] diamond 339 62 0.993548387096774 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
31040859 31040859 PRJNA534016_P_NODE_15435_length_247_cov_1.212644_g15345_i0 PRJNA534016 15435 247 1.212644 2.99523068 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 103 1.1399999999999999e-23   NR RHY08398.1 112090 g15345 i0 73.1 2.84210526315789 78 21 94.7 0 235 2 3 80 RHY08398.1 hypothetical protein DYB25_006691, partial [Aphanomyces astaci] diamond 702 104 0.990384615384615 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
31088826 31088826 PRJNA534016_P_NODE_12995_length_255_cov_2.362637_g12905_i0 PRJNA534016 12995 255 2.362637 6.02472435 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 108 1.66e-25   NR GLD95580.1 114742 g12905 i0 73.9 1.62352941176471 69 18 81.2 0 2 208 413 481 GLD95580.1 hypothetical protein PINS_up004257 [Pythium insidiosum] diamond 414 108 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
32354376 32354376 PRJNA534016_P_NODE_17259_length_243_cov_1.005882_g17169_i0 PRJNA534016 17259 243 1.005882 2.44429326 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 55.1 1.05e-6   NR KAH9085172.1 100861 g17169 i0 44.4 1 81 35 98.8 3 3 242 28 99 KAH9085172.1 hypothetical protein LEN26_020601 [Aphanomyces euteiches] diamond 243 55.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;