RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA534016", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA534016 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1782845 1782845 PRJNA534016_P_NODE_16242_length_245_cov_2.238372_g16152_i0 PRJNA534016 16242 245 2.238372 5.4840114 Campylobacter sp. 19-13652 2840180 Bacteria Bacteria 65.8 2.84e-6   NTclustered gi|2052158881|dbj|AP024713.1| 2840180 g16152 i0 82.667 0.918367346938776 75 11 30 2 155 227 1151782 1151708 Campylobacter sp. 19-13652 DNA, complete genome blastn 225 65.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. 19-13652
18969815 18969815 PRJNA534016_P_NODE_7515_length_309_cov_1.957627_g7425_i0 PRJNA534016 7515 309 1.957627 6.04906743 Halarcobacter 2321115 Bacteria Bacteria 54.7 0.008   NTclustered gi|2621784481|emb|OY780939.1| 2321133 g7425 i0 100 0.187702265372168 29 0 9 0 41 69 697884 697856 MAG: Halarcobacter sp. isolate c23ce619-377f-483f-a597-00588adfbfa9 genome assembly, chromosome: 1 blastn 58 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Halarcobacter Halarcobacter sp.
19633581 19633581 PRJNA534016_P_NODE_1696_length_628_cov_23.956757_g1609_i0 PRJNA534016 1696 628 23.956757 150.44843396 Arcobacter iocasae 2906515 Bacteria Bacteria 54.7 0.017   NTclustered gi|2809047151|gb|CP090177.1| 2906515 g1609 i0 100 0.0461783439490446 29 0 5 0 73 101 1017122 1017150 Arcobacter sp. KX21116 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter iocasae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;