RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA534016", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 4 ✖

tax_kingdom 1

  • Metazoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA534016 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8160367 8160367 PRJNA534016_P_NODE_6927_length_321_cov_1.241935_g6837_i0 PRJNA534016 6927 321 1.241935 3.98661135 Metazoa 33208 Echinodermata other_Eukaryota 86.3 1.74e-19   NR XP_041472041.1 7654 g6837 i0 97.5 36.4485981308411 40 1 37.4 0 3 122 56 95 XP_041472041.1 protein transport protein Sec61 subunit beta-like [Lytechinus variegatus] diamond 11700 86.3 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
29303204 29303204 PRJNA534016_P_NODE_489_length_1149_cov_9.022305_g434_i0 PRJNA534016 489 1149 9.022305 103.66628445 Metazoa 33208 Echinodermata other_Eukaryota 266 2.88e-76   NR XP_063962432.1 7653 g434 i0 39.9 1.59268929503916 293 168 76.5 6 162 1040 279 563 XP_063962432.1 zonadhesin-like isoform X2 [Lytechinus pictus] diamond 1830 266 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
31135066 31135066 PRJNA534016_P_NODE_9675_length_281_cov_3.221154_g9585_i0 PRJNA534016 9675 281 3.221154 9.05144274 Metazoa 33208 Echinodermata other_Eukaryota 71.6 3.92e-12   NR XP_038077129.1 46514 g9585 i0 50 1.48398576512456 68 33 72.6 1 219 16 15 81 XP_038077129.1 deoxyribonuclease-1-like [Patiria miniata] diamond 417 71.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
31324984 31324984 PRJNA534016_P_NODE_6535_length_329_cov_1.574219_g6445_i0 PRJNA534016 6535 329 1.574219 5.17918051 Metazoa 33208 Echinodermata other_Eukaryota 136 7.5e-36   NR KAJ8042215.1 206669 g6445 i0 56 1.98784194528875 109 48 99.4 0 329 3 154 262 KAJ8042215.1 DnaJ-like subfamily A member 2 [Holothuria leucospilota] diamond 654 137 0.992700729927007 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;