RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA534016", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA534016 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10711553 10711553 PRJNA534016_P_NODE_17449_length_243_cov_0.905882_g17359_i0 PRJNA534016 17449 243 0.905882 2.20129326 Mycoplasma iguanae 292461 Bacteria Bacteria 52.8 0.022   NTclustered gi|2288165161|gb|CP102734.1| 292461 g17359 i0 100 0.11522633744856 28 0 12 0 191 218 183377 183350 Mycoplasma iguanae strain 2327 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma iguanae
20909640 20909640 PRJNA534016_P_NODE_8437_length_292_cov_1.972603_g8347_i0 PRJNA534016 8437 292 1.972603 5.76000076 Spiroplasma endosymbiont of Dioctria linearis 3066290 Bacteria Bacteria 54.7 0.008   NTclustered gi|2719904871|emb|OZ034984.1| 3066290 g8347 i0 100 0.0993150684931507 29 0 10 0 54 82 1138876 1138904 Spiroplasma endosymbiont of Dioctria linearis isolate 54760 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma endosymbiont of Dioctria linearis
24733527 24733527 PRJNA534016_P_NODE_6280_length_335_cov_1.763359_g6190_i0 PRJNA534016 6280 335 1.763359 5.90725265 Mycoplasmatota bacterium WC30 3075149 Bacteria Bacteria 52.8 0.032   NTclustered gi|2877983046|gb|CP134495.1| 3075149 g6190 i0 100 0.167164179104478 28 0 8 0 227 254 1864611 1864584 Mycoplasmatota bacterium WC30 chromosome, complete genome blastn 56 52.8 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium WC30

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;