RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA534016", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA534016 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23459778 23459778 PRJNA534016_P_NODE_3339_length_446_cov_2.930295_g3249_i0 PRJNA534016 3339 446 2.930295 13.0691157 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 106 3.27e-18   NTclustered gi|294874782|ref|XM_002767050.1| 423536 g3249 i0 93.056 0.246636771300448 72 5 16 0 73 144 8 79 Perkinsus marinus ATCC 50983 60S ribosomal protein L29, putative, mRNA blastn 110 106 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
30819444 30819444 PRJNA534016_P_NODE_12534_length_259_cov_1.811828_g12444_i0 PRJNA534016 12534 259 1.811828 4.69263452 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 53.1 7.46e-6   NR KAF4683522.1 32597 g12444 i0 57.5 2.74517374517375 40 17 46.3 0 258 139 130 169 KAF4683522.1 GTP-binding protein 10, partial [Perkinsus olseni] diamond 711 53.1 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
31120115 31120115 PRJNA534016_P_NODE_10575_length_274_cov_2.298507_g10485_i0 PRJNA534016 10575 274 2.298507 6.29790918 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 48.5 1.06e-4   NR XP_002782161.1 423536 g10485 i0 85.2 0.295620437956204 27 4 29.6 0 190 270 12 38 XP_002782161.1 roadblock, putative [Perkinsus marinus ATCC 50983] diamond 81 48.5 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;