RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA534016", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA534016 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8160211 8160211 PRJNA534016_P_NODE_12487_length_259_cov_3.010753_g12397_i0 PRJNA534016 12487 259 3.010753 7.79785027 uncultured Verrucomicrobia subdivision 3 bacterium 257465 Bacteria Bacteria 479 9.13e-131   NTclustered gi|378401408|emb|HE648177.1| 257465 g12397 i0 100 98.4362934362934 259 0 100 0 1 259 1413 1155 Uncultured Verrucomicrobia subdivision 3 bacterium partial 16S rRNA gene, clone P3 blastn 25495 479 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales     uncultured Verrucomicrobia subdivision 3 bacterium
8160350 8160350 PRJNA534016_P_NODE_5487_length_355_cov_2.691489_g5397_i0 PRJNA534016 5487 355 2.691489 9.55478595 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 149 9.919999999999997e-42   NR HCP06138.1 2026801 g5397 i0 67 3.65070422535211 115 31 97.2 2 1 345 145 252 HCP06138.1 transaldolase [Verrucomicrobiales bacterium] diamond 1296 149 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
26919647 26919647 PRJNA534016_P_NODE_17502_length_243_cov_0.905882_g17412_i0 PRJNA534016 17502 243 0.905882 2.20129326 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 100 1.86e-23   NR MBN9692575.1 2026799 g17412 i0 97.9 0.592592592592593 48 1 59.3 0 243 100 223 270 MBN9692575.1 EamA family transporter [Verrucomicrobiota bacterium] diamond 144 100 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27123998 27123998 PRJNA534016_P_NODE_18882_length_232_cov_2.792453_g18792_i0 PRJNA534016 18882 232 2.792453 6.47849096 Verrucomicrobiota 74201 Bacteria Bacteria 46.6 0.00136   NR HEY6675445.1 1965319 g18792 i0 41.1 2.14655172413793 56 33 72.4 0 24 191 18 73 HEY6675445.1 adenylate/guanylate cyclase domain-containing protein [Terrimicrobium sp.] diamond 498 46.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae Terrimicrobium Terrimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;