RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA534016", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 8 ✖

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA534016 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
507588 507588 PRJNA534016_P_NODE_2361_length_534_cov_1.624729_g2272_i0 PRJNA534016 2361 534 1.624729 8.67605286 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 374 9.849999999999999e-99   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g2272 i0 79.707 32.9625468164794 547 88 100 20 1 534 41592 42128 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 17602 374 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
5611336 5611336 PRJNA534016_P_NODE_3905_length_416_cov_2.297376_g3815_i0 PRJNA534016 3905 416 2.297376 9.55708416 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 268 3.6499999999999996e-67   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g3815 i0 85.882 10.7908653846154 255 33 61 3 118 371 42634 42382 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 4489 268 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
14536353 14536353 PRJNA534016_P_NODE_18772_length_235_cov_2.327160_g18682_i0 PRJNA534016 18772 235 2.32716 5.468826 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.1 1.37e-12   NR XP_004334642.1 1257118 g18682 i0 71.2 0.663829787234043 52 15 66.4 0 235 80 129 180 XP_004334642.1 Ras family GTPase [Acanthamoeba castellanii str. Neff] diamond 156 70.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28972683 28972683 PRJNA534016_P_NODE_12368_length_260_cov_2.192513_g12278_i0 PRJNA534016 12368 260 2.192513 5.7005338 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 127 1.23e-34   NR XP_004333640.1 1257118 g12278 i0 67.4 1.97307692307692 86 28 99.2 0 260 3 39 124 XP_004333640.1 peroxiredoxin 2, putative [Acanthamoeba castellanii str. Neff] diamond 513 127 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29477443 29477443 PRJNA534016_P_NODE_11470_length_267_cov_2.149485_g11380_i0 PRJNA534016 11470 267 2.149485 5.73912495 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 51.2 5.04e-5   NR XP_004339463.1 1257118 g11380 i0 75 0.359550561797753 32 7 34.8 1 175 267 229 260 XP_004339463.1 Rad23, putative [Acanthamoeba castellanii str. Neff] diamond 96 51.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29983036 29983036 PRJNA534016_P_NODE_13691_length_251_cov_0.865169_g13601_i0 PRJNA534016 13691 251 0.865169 2.17157419 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 42 0.0467   NR XP_004353741.1 1257118 g13601 i0 52.1 0.573705179282869 48 22 57.4 1 207 64 26 72 XP_004353741.1 uncharacterized protein ACA1_376980 [Acanthamoeba castellanii str. Neff] diamond 144 42 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30661434 30661434 PRJNA534016_P_NODE_10413_length_276_cov_1.285714_g10323_i0 PRJNA534016 10413 276 1.285714 3.54857064 root 1 Root_unresolved Root_unresolved 95.1 4.17e-22   NR XP_004340539.1 1257118 g10323 i0 55.1 1.84782608695652 89 40 96.7 0 268 2 98 186 XP_004340539.1 Ras GTPase rap1b, putative [Acanthamoeba castellanii str. Neff] diamond 510 95.5 0.995811518324607 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31721306 31721306 PRJNA534016_P_NODE_17157_length_243_cov_2.135294_g17067_i0 PRJNA534016 17157 243 2.135294 5.18876442 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 115 2.26e-30   NR XP_004334124.1 1257118 g17067 i0 73.8 1.03703703703704 84 17 98.8 2 242 3 13 95 XP_004334124.1 succinateCoA ligase, GDP-forming, beta subunit, putative, partial [Acanthamoeba castellanii str. Neff] diamond 252 115 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;