RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where bioproject = "PRJNA534016" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 17 ✖

bioproject 1

  • PRJNA534016 · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
507588 507588 PRJNA534016_P_NODE_2361_length_534_cov_1.624729_g2272_i0 PRJNA534016 2361 534 1.624729 8.67605286 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 374 9.849999999999999e-99   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g2272 i0 79.707 32.9625468164794 547 88 100 20 1 534 41592 42128 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 17602 374 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
5611336 5611336 PRJNA534016_P_NODE_3905_length_416_cov_2.297376_g3815_i0 PRJNA534016 3905 416 2.297376 9.55708416 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 268 3.6499999999999996e-67   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g3815 i0 85.882 10.7908653846154 255 33 61 3 118 371 42634 42382 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 4489 268 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
11986299 11986299 PRJNA534016_P_NODE_5890_length_344_cov_1.638376_g5800_i0 PRJNA534016 5890 344 1.638376 5.63601344 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.033   NTclustered gi|66826106|ref|XM_641316.1| 352472 g5800 i0 100 0.0813953488372093 28 0 8 0 78 105 1976 1949 Dictyostelium discoideum AX4 7-fold repeat in clathrin and VPS proteins repeat-containing protein (vps18) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
13261259 13261259 PRJNA534016_P_NODE_13031_length_255_cov_1.692308_g12941_i0 PRJNA534016 13031 255 1.692308 4.3153854 Dictyostelium discoideum 44689 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|66802076|ref|XM_629830.1| 352472 g12941 i0 100 0.117647058823529 30 0 12 0 84 113 512 541 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0292106) mRNA, complete cds blastn 30 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
14536253 14536253 PRJNA534016_P_NODE_11972_length_263_cov_2.942105_g11882_i0 PRJNA534016 11972 263 2.942105 7.73773615 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 320 5.96e-83   NTclustered gi|221185864|gb|FJ577811.1| 590481 g11882 i0 94.286 74.0342205323194 210 10 79 2 52 259 786 995 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 19471 320 1 Eukaryota Amoebozoa             uncultured Amoebozoa
14536266 14536266 PRJNA534016_P_NODE_13292_length_253_cov_1.711111_g13202_i0 PRJNA534016 13292 253 1.711111 4.32911083 Entamoeba dispar 46681 Evosea other_Eukaryota 281 2.69e-71   NTclustered gi|167394534|ref|XM_001740954.1| 370354 g13202 i0 87.654 97.9604743083004 243 28 96 2 5 246 235 476 Entamoeba dispar SAW760 actin, putative (EDI_043510), partial mRNA blastn 24784 281 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
14536353 14536353 PRJNA534016_P_NODE_18772_length_235_cov_2.327160_g18682_i0 PRJNA534016 18772 235 2.32716 5.468826 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.1 1.37e-12   NR XP_004334642.1 1257118 g18682 i0 71.2 0.663829787234043 52 15 66.4 0 235 80 129 180 XP_004334642.1 Ras family GTPase [Acanthamoeba castellanii str. Neff] diamond 156 70.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17696250 17696250 PRJNA534016_P_NODE_8974_length_287_cov_1.443925_g8884_i0 PRJNA534016 8974 287 1.443925 4.14406475 Amoebidae 35218 Tubulinea other_Eukaryota 303 6.64e-78   NTclustered gi|17897590|emb|AJ314605.1| 160820 g8884 i0 89.344 51.3728222996516 244 22 84 3 47 287 1507 1749 Amoeba leningradensis partial 16S rRNA gene, strain CCAP 1503/6 blastn 14744 303 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba leningradensis
27615039 27615039 PRJNA534016_P_NODE_16844_length_244_cov_0.900585_g16754_i0 PRJNA534016 16844 244 0.900585 2.1974274 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 55.1 1.66e-6   NR XP_012756375.1 1410327 g16754 i0 40.5 0.971311475409836 79 38 97.1 3 1 237 107 176 XP_012756375.1 hypothetical protein SAMD00019534_027880 [Acytostelium subglobosum LB1] diamond 237 55.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
27678348 27678348 PRJNA534016_P_NODE_9664_length_282_cov_0.985646_g9574_i0 PRJNA534016 9664 282 0.985646 2.77952172 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 92.4 9.95e-20   NR PRP81590.1 1890364 g9574 i0 55.4 0.787234042553192 74 33 78.7 0 59 280 15 88 PRP81590.1 hypothetical protein PROFUN_01097 [Planoprotostelium fungivorum] diamond 222 92.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28972683 28972683 PRJNA534016_P_NODE_12368_length_260_cov_2.192513_g12278_i0 PRJNA534016 12368 260 2.192513 5.7005338 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 127 1.23e-34   NR XP_004333640.1 1257118 g12278 i0 67.4 1.97307692307692 86 28 99.2 0 260 3 39 124 XP_004333640.1 peroxiredoxin 2, putative [Acanthamoeba castellanii str. Neff] diamond 513 127 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29477443 29477443 PRJNA534016_P_NODE_11470_length_267_cov_2.149485_g11380_i0 PRJNA534016 11470 267 2.149485 5.73912495 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 51.2 5.04e-5   NR XP_004339463.1 1257118 g11380 i0 75 0.359550561797753 32 7 34.8 1 175 267 229 260 XP_004339463.1 Rad23, putative [Acanthamoeba castellanii str. Neff] diamond 96 51.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29983036 29983036 PRJNA534016_P_NODE_13691_length_251_cov_0.865169_g13601_i0 PRJNA534016 13691 251 0.865169 2.17157419 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 42 0.0467   NR XP_004353741.1 1257118 g13601 i0 52.1 0.573705179282869 48 22 57.4 1 207 64 26 72 XP_004353741.1 uncharacterized protein ACA1_376980 [Acanthamoeba castellanii str. Neff] diamond 144 42 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30661434 30661434 PRJNA534016_P_NODE_10413_length_276_cov_1.285714_g10323_i0 PRJNA534016 10413 276 1.285714 3.54857064 root 1 Root_unresolved Root_unresolved 95.1 4.17e-22   NR XP_004340539.1 1257118 g10323 i0 55.1 1.84782608695652 89 40 96.7 0 268 2 98 186 XP_004340539.1 Ras GTPase rap1b, putative [Acanthamoeba castellanii str. Neff] diamond 510 95.5 0.995811518324607 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31057600 31057600 PRJNA534016_P_NODE_11635_length_266_cov_1.595855_g11545_i0 PRJNA534016 11635 266 1.595855 4.2449743 Entamoeba invadens IP1 370355 Evosea other_Eukaryota 56.2 8.92e-7   NR XP_004258468.1 370355 g11545 i0 42.7 0.924812030075188 82 44 90.2 2 27 266 35 115 XP_004258468.1 cysteine protease, putative [Entamoeba invadens IP1] diamond 246 56.2 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens
31721306 31721306 PRJNA534016_P_NODE_17157_length_243_cov_2.135294_g17067_i0 PRJNA534016 17157 243 2.135294 5.18876442 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 115 2.26e-30   NR XP_004334124.1 1257118 g17067 i0 73.8 1.03703703703704 84 17 98.8 2 242 3 13 95 XP_004334124.1 succinateCoA ligase, GDP-forming, beta subunit, putative, partial [Acanthamoeba castellanii str. Neff] diamond 252 115 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32827449 32827449 PRJNA534016_P_NODE_15280_length_248_cov_0.880000_g15190_i0 PRJNA534016 15280 248 0.88 2.1824 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 62 6.66e-9   NR PRP80242.1 1890364 g15190 i0 45.8 0.713709677419355 59 32 71.4 0 3 179 2868 2926 PRP80242.1 hypothetical protein PROFUN_12181 [Planoprotostelium fungivorum] diamond 177 62 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;