RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA533623" and tax_phylum = "Candidatus Binatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Binatota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA533623 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1782089 1782089 PRJNA533623_P_NODE_50402_length_292_cov_6.471861_g48623_i0 PRJNA533623 50402 292 6.471861 18.89783412 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 82 5.61e-16   NR HEX7409472.1 2838779 g48623 i0 50.6 1.77739726027397 87 42 88.4 1 32 289 254 340 HEX7409472.1 NAD-dependent epimerase/dehydratase family protein [Candidatus Binatia bacterium] diamond 519 82 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
28120031 28120031 PRJNA533623_P_NODE_40625_length_341_cov_3.335714_g38851_i0 PRJNA533623 40625 341 3.335714 11.37478474 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 195 7.689999999999999e-61   NR HET9295273.1 2838779 g38851 i0 99 0.897360703812317 102 1 89.7 0 26 331 59 160 HET9295273.1 nitroreductase family protein [Candidatus Binatia bacterium] diamond 306 195 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
29445978 29445978 PRJNA533623_P_NODE_70190_length_219_cov_4.056962_g68409_i0 PRJNA533623 70190 219 4.056962 8.88474678 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 41.2 0.00741   NR HEY8517430.1 2838779 g68409 i0 82.1 0.383561643835616 28 4 38.4 1 218 135 11 37 HEY8517430.1 DUF3309 family protein [Candidatus Binatia bacterium] diamond 84 41.2 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;