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contig_metadata

17 rows where bioproject = "PRJNA533623", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 17 ✖

tax_kingdom 1

  • Metazoa · 17 ✖

tax_clade 1

bioproject 1

  • PRJNA533623 · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6221637 6221637 PRJNA533623_P_NODE_54385_length_275_cov_40.481308_g52606_i0 PRJNA533623 54385 275 40.481308 111.323597 Xiphinema 46002 Nematoda Nematoda 340 4.82e-89   NTclustered gi|32527557|gb|AY210845.1| 70223 g52606 i0 91.235 54.2618181818182 251 21 91 1 1 251 2816 2567 Xiphinema rivesi 28S ribosomal RNA gene, partial sequence blastn 14922 340 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Xiphinema Xiphinema rivesi
7496214 7496214 PRJNA533623_P_NODE_64486_length_238_cov_2.033898_g62705_i0 PRJNA533623 64486 238 2.033898 4.84067724 Longidoridae 46001 Nematoda Nematoda 132 2.67e-26   NTclustered gi|32527557|gb|AY210845.1| 70223 g62705 i0 94.186 36.5672268907563 86 5 36 0 1 86 2801 2716 Xiphinema rivesi 28S ribosomal RNA gene, partial sequence blastn 8703 132 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Xiphinema Xiphinema rivesi
9434351 9434351 PRJNA533623_P_NODE_20908_length_509_cov_15.660714_g19161_i0 PRJNA533623 20908 509 15.660714 79.71303426 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.014   NTclustered gi|1557394408|emb|LR031564.1| 45931 g19161 i0 94.444 0.0707269155206287 36 1 7 1 1 35 23 58 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 36 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
15809967 15809967 PRJNA533623_P_NODE_7453_length_850_cov_5.927757_g6043_i0 PRJNA533623 7453 850 5.927757 50.3859345 Gongylonema pulchrum 637853 Nematoda Nematoda 208 2.04e-63   NR VDN21636.1 637853 g6043 i0 61.8 9.40235294117647 157 59 55.4 1 363 833 29 184 VDN21636.1 unnamed protein product [Gongylonema pulchrum] diamond 7992 208 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gongylonematidae Gongylonema Gongylonema pulchrum
23459277 23459277 PRJNA533623_P_NODE_65159_length_235_cov_31.304598_g63378_i0 PRJNA533623 65159 235 31.304598 73.5658053 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.021   NTclustered gi|1557394408|emb|LR031564.1| 45931 g63378 i0 100 0.119148936170213 28 0 12 0 208 235 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
26856526 26856526 PRJNA533623_P_NODE_36021_length_369_cov_3.896104_g34249_i0 PRJNA533623 36021 369 3.896104 14.37662376 Ostertagia ostertagi 6317 Nematoda Nematoda 46.6 0.00533   NR KAK6013988.1 6317 g34249 i0 33.3 0.536585365853659 66 43 52.8 1 13 207 122 187 KAK6013988.1 BTB/POZ domain protein, partial [Ostertagia ostertagi] diamond 198 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
27945581 27945581 PRJNA533623_P_NODE_16005_length_589_cov_6.899621_g14291_i0 PRJNA533623 16005 589 6.899621 40.63876769 Onchocercidae 6296 Nematoda Nematoda 67.8 1.91e-9   NR VDK74082.1 42156 g14291 i0 33.3 2.10356536502547 126 78 61.1 1 46 405 310 435 VDK74082.1 unnamed protein product [Litomosoides sigmodontis] diamond 1239 67.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Litomosoides Litomosoides sigmodontis
28734964 28734964 PRJNA533623_P_NODE_49527_length_296_cov_11.080851_g47748_i0 PRJNA533623 49527 296 11.080851 32.79931896 Metazoa 33208 Nematoda Nematoda 46.2 3.59e-4   NR TKR82886.1 34508 g47748 i0 51 2.90878378378378 51 25 51.7 0 228 76 14 64 TKR82886.1 hypothetical protein L596_016558 [Steinernema carpocapsae] diamond 861 46.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
29540752 29540752 PRJNA533623_P_NODE_25270_length_458_cov_10.241814_g23505_i0 PRJNA533623 25270 458 10.241814 46.90750812 Cylicocyclus nassatus 53992 Nematoda Nematoda 53.5 6.19e-5   NR CAJ0602149.1 53992 g23505 i0 47.1 0.825327510917031 51 26 32.8 1 37 186 335 385 CAJ0602149.1 unnamed protein product [Cylicocyclus nassatus] diamond 378 53.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus
30046007 30046007 PRJNA533623_P_NODE_51671_length_287_cov_1.429204_g49892_i0 PRJNA533623 51671 287 1.429204 4.10181548 Auanema sp. JU1783 2878363 Nematoda Nematoda 55.5 2.18e-6   NR CAI4230385.1 2878363 g49892 i0 34.2 1.81881533101045 79 52 82.6 0 277 41 325 403 CAI4230385.1 unnamed protein product [Auanema sp. JU1783] diamond 522 55.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
30219029 30219029 PRJNA533623_P_NODE_57792_length_262_cov_4.238806_g56012_i0 PRJNA533623 57792 262 4.238806 11.10567172 Metazoa 33208 Nematoda Nematoda 47 0.00145   NR VDP00748.1 241478 g56012 i0 42 3.44656488549618 50 29 57.3 0 252 103 316 365 VDP00748.1 unnamed protein product [Soboliphyme baturini] diamond 903 47 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
30583087 30583087 PRJNA533623_P_NODE_15953_length_590_cov_8.047259_g14239_i0 PRJNA533623 15953 590 8.047259 47.4788281 Steinernema carpocapsae 34508 Nematoda Nematoda 56.6 1.19e-5   NR TKR61882.1 34508 g14239 i0 38 0.777966101694915 71 39 36.1 2 85 297 293 358 TKR61882.1 hypothetical protein L596_028934 [Steinernema carpocapsae] diamond 459 56.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
30945951 30945951 PRJNA533623_P_NODE_16894_length_572_cov_7.956947_g15169_i0 PRJNA533623 16894 572 7.956947 45.51373684 Metazoa 33208 Nematoda Nematoda 125 9.57e-33   NR VDK69161.1 42157 g15169 i0 50.4 3.83916083916084 131 59 68.7 2 158 550 32 156 VDK69161.1 unnamed protein product [Onchocerca ochengi] diamond 2196 125 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Onchocerca Onchocerca ochengi
31436575 31436575 PRJNA533623_P_NODE_71516_length_215_cov_4.162338_g69735_i0 PRJNA533623 71516 215 4.162338 8.9490267 Pristionchus pacificus 54126 Nematoda Nematoda 48.9 1.13e-4   NR KAF8362018.1 54126 g69735 i0 67.6 0.474418604651163 34 11 47.4 0 191 90 154 187 KAF8362018.1 ddl-1 [Pristionchus pacificus] diamond 102 48.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
31784381 31784381 PRJNA533623_P_NODE_23577_length_476_cov_26.734940_g21819_i0 PRJNA533623 23577 476 26.73494 127.2583144 Caenorhabditis portoensis 1094334 Nematoda Nematoda 88.6 1.13e-18   NR AET24964.1 1094334 g21819 i0 69 1.45588235294118 58 17 35.9 1 467 297 119 176 AET24964.1 U3 small nucleolar ribonucleoprotein (snoRNP) component, partial [Caenorhabditis portoensis] diamond 693 88.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis portoensis
32306026 32306026 PRJNA533623_P_NODE_20439_length_516_cov_11.615385_g18692_i0 PRJNA533623 20439 516 11.615385 59.9353866 Metazoa 33208 Nematoda Nematoda 59.3 9.87e-7   NR XP_024506430.1 34506 g18692 i0 42.9 2.25581395348837 70 36 39.5 3 292 495 45 112 XP_024506430.1 GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Strongyloides ratti] diamond 1164 59.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
32606936 32606936 PRJNA533623_P_NODE_10440_length_726_cov_22.433083_g8869_i0 PRJNA533623 10440 726 22.433083 162.86418258 Thelazia callipaeda 103827 Nematoda Nematoda 52.4 4.79e-4   NR VDN02193.1 103827 g8869 i0 32.7 0.772727272727273 98 64 40.1 2 230 520 43 139 VDN02193.1 unnamed protein product [Thelazia callipaeda] diamond 561 52.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Thelaziidae Thelazia Thelazia callipaeda

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;