RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA533623", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA533623 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27046189 27046189 PRJNA533623_P_NODE_47642_length_305_cov_3.196721_g45863_i0 PRJNA533623 47642 305 3.196721 9.74999905 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 45.1 0.0119   NR XP_002768122.1 423536 g45863 i0 37.1 1.33770491803279 62 39 61 0 119 304 19 80 XP_002768122.1 Carbon catabolite derepressing protein kinase, putative [Perkinsus marinus ATCC 50983] diamond 408 45.1 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
31008996 31008996 PRJNA533623_P_NODE_73234_length_210_cov_6.234899_g71453_i0 PRJNA533623 73234 210 6.234899 13.0932879 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 89 7.67e-19   NR KAF4731232.1 32597 g71453 i0 68.4 9.91428571428571 57 18 81.4 0 185 15 44 100 KAF4731232.1 hypothetical protein FOZ62_030041 [Perkinsus olseni] diamond 2082 89.4 0.995525727069351 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;