RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA533623", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA533623 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28088346 28088346 PRJNA533623_P_NODE_1625_length_1596_cov_62.880782_g1029_i0 PRJNA533623 1625 1596 62.880782 1003.57728072 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 294 2.98e-83   NR MFA5147284.1 2035772 g1029 i0 41.6 0.718045112781955 382 196 71.2 7 421 1557 721 1078 MFA5147284.1 Ig-like domain-containing protein [Candidatus Omnitrophota bacterium] diamond 1146 294 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28277739 28277739 PRJNA533623_P_NODE_33706_length_384_cov_26.501548_g31935_i0 PRJNA533623 33706 384 26.501548 101.76594432 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 226 1.8499999999999999e-69   NR MFA5388825.1 2035772 g31935 i0 87.7 1.90625 122 15 95.3 0 19 384 136 257 MFA5388825.1 amidophosphoribosyltransferase [Candidatus Omnitrophota bacterium] diamond 732 226 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28499089 28499089 PRJNA533623_P_NODE_14427_length_620_cov_12.440072_g12737_i0 PRJNA533623 14427 620 12.440072 77.1284464 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 120 6.759999999999999e-32   NR MFA5499621.1 2035772 g12737 i0 78.7 0.362903225806452 75 16 36.3 0 289 513 1 75 MFA5499621.1 helix-turn-helix domain-containing protein [Candidatus Omnitrophota bacterium] diamond 225 120 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31595006 31595006 PRJNA533623_P_NODE_68916_length_223_cov_4.481481_g67135_i0 PRJNA533623 68916 223 4.481481 9.99370263 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 42.4 0.0393   NR MCX5692892.1 2035772 g67135 i0 42.6 0.632286995515695 47 27 63.2 0 75 215 753 799 MCX5692892.1 efflux RND transporter permease subunit [Candidatus Omnitrophota bacterium] diamond 141 42.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;