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contig_metadata

33 rows where bioproject = "PRJNA533623", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 33 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 33 ✖

bioproject 1

  • PRJNA533623 · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
507010 507010 PRJNA533623_P_NODE_60501_length_252_cov_2.486911_g58721_i0 PRJNA533623 60501 252 2.486911 6.26701572 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 120 1.7199999999999998e-32   NR MEP7226613.1 2448054 g58721 i0 88.6 4.70238095238095 79 9 94 0 237 1 92 170 MEP7226613.1 F0F1 ATP synthase subunit B [Gemmatimonadales bacterium] diamond 1185 120 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
1781816 1781816 PRJNA533623_P_NODE_38222_length_355_cov_22.159864_g36450_i0 PRJNA533623 38222 355 22.159864 78.6675172 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 129 1.2699999999999998e-32   NR MBA3444490.1 2448054 g36450 i0 93.8 3.24507042253521 64 4 54.1 0 141 332 1 64 MBA3444490.1 adenylosuccinate lyase [Gemmatimonadales bacterium] diamond 1152 129 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
3057025 3057025 PRJNA533623_P_NODE_22203_length_492_cov_12.846868_g20450_i0 PRJNA533623 22203 492 12.846868 63.20659056 Pseudomonadati 3379134 Bacteria Bacteria 137 1.08e-35   NR HEX5634624.1 2448054 g20450 i0 72.3 2.5609756097561 101 28 61.6 0 321 19 10 110 HEX5634624.1 RtcB family protein [Gemmatimonadales bacterium] diamond 1260 137 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
4333136 4333136 PRJNA533623_P_NODE_26344_length_448_cov_2.330749_g24575_i0 PRJNA533623 26344 448 2.330749 10.44175552 Bacteria 2 Bacteria Bacteria 190 3.3900000000000008e-59   NR MEO8200854.1 2026742 g24575 i0 84.5 6.20089285714286 116 18 77.7 0 99 446 1 116 MEO8200854.1 acyl-CoA thioesterase [Gemmatimonadota bacterium] diamond 2778 191 0.994764397905759 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
6883466 6883466 PRJNA533623_P_NODE_12206_length_674_cov_2.768352_g10570_i0 PRJNA533623 12206 674 2.768352 18.65869248 Longimicrobium sp. 2029185 Bacteria Bacteria 292 5.9799999999999996e-95   NR HEX6370854.1 2029185 g10570 i0 73.8 0.934718100890208 210 55 93.5 0 27 656 29 238 HEX6370854.1 alpha/beta hydrolase [Longimicrobium sp.] diamond 630 292 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
6884014 6884014 PRJNA533623_P_NODE_33986_length_382_cov_18.258567_g32215_i0 PRJNA533623 33986 382 18.258567 69.74772594 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 215 4.39e-51   NTclustered gi|226088597|dbj|AP009153.1| 379066 g32215 i0 83.333 12.761780104712 234 38 61 1 26 258 412845 412612 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 4875 215 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
9434564 9434564 PRJNA533623_P_NODE_29148_length_421_cov_25.488889_g27378_i0 PRJNA533623 29148 421 25.488889 107.30822269 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 171 1.57e-48   NR HEX5962988.1 2448054 g27378 i0 86.3 6.69833729216152 95 13 67.7 0 410 126 336 430 HEX5962988.1 methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO [Gemmatimonadales bacterium] diamond 2820 171 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
15809066 15809066 PRJNA533623_P_NODE_35293_length_374_cov_1.367412_g33521_i0 PRJNA533623 35293 374 1.367412 5.11412088 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 244 1.33e-75   NR HZI27665.1 2026741 g33521 i0 90.3 3.97860962566845 124 12 99.5 0 1 372 185 308 HZI27665.1 M28 family peptidase [Gemmatimonadaceae bacterium] diamond 1488 244 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
19631964 19631964 PRJNA533623_P_NODE_16876_length_572_cov_18.823875_g15151_i0 PRJNA533623 16876 572 18.823875 107.672565 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 270 1.43e-67   NTclustered gi|575456455|gb|CP007128.1| 861299 g15151 i0 91.753 9.46153846153846 194 16 52 0 355 548 1768200 1768007 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 5412 270 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
23459511 23459511 PRJNA533623_P_NODE_76979_length_203_cov_0.915493_g75198_i0 PRJNA533623 76979 203 0.915493 1.85845079 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 252 1.63e-62   NTclustered gi|2874253978|emb|OY970303.1| 412054 g75198 i0 90.526 0.935960591133005 190 18 94 0 1 190 3155765 3155954 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 190 252 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
27046191 27046191 PRJNA533623_P_NODE_52662_length_282_cov_19.158371_g50883_i0 PRJNA533623 52662 282 19.158371 54.02660622 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 94.4 4.09e-20   NR HEY5939713.1 2448054 g50883 i0 92 7.4468085106383 50 4 53.2 0 172 23 1 50 HEY5939713.1 DNA polymerase/3'-5' exonuclease PolX [Gemmatimonadales bacterium] diamond 2100 94.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27693248 27693248 PRJNA533623_P_NODE_16344_length_583_cov_6.896552_g14625_i0 PRJNA533623 16344 583 6.896552 40.20689816 Bacteria 2 Bacteria Bacteria 115 3.47e-26   NR MEO5568564.1 2026741 g14625 i0 37.1 8.75814751286449 210 67 76.2 4 513 70 1 207 MEO5568564.1 FAD-dependent oxidoreductase [Gemmatimonadaceae bacterium] diamond 5106 116 0.991379310344828 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27993850 27993850 PRJNA533623_P_NODE_17725_length_557_cov_17.772177_g15993_i0 PRJNA533623 17725 557 17.772177 98.99102589 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 65.1 1.96e-9   NR MBE0595001.1 2448054 g15993 i0 41.7 0.452423698384201 84 49 45.2 0 26 277 71 154 MBE0595001.1 TRAP transporter small permease [Gemmatimonadales bacterium] diamond 252 65.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28182920 28182920 PRJNA533623_P_NODE_25646_length_454_cov_34.035623_g23878_i0 PRJNA533623 25646 454 34.035623 154.52172842 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 45.4 0.0334   NR HEY7529790.1 2026742 g23878 i0 29.3 1.45374449339207 133 89 87.9 1 405 7 329 456 HEY7529790.1 hypothetical protein [Gemmatimonadota bacterium] diamond 660 45.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28341050 28341050 PRJNA533623_P_NODE_35306_length_373_cov_39.878205_g33534_i0 PRJNA533623 35306 373 39.878205 148.74570465 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 148 1.9699999999999998e-38   NR HJR15522.1 2448054 g33534 i0 90.8 3.2171581769437 76 7 61.1 0 246 19 282 357 HJR15522.1 cell surface protein SprA [Gemmatimonadales bacterium] diamond 1200 148 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28341073 28341073 PRJNA533623_P_NODE_78586_length_195_cov_7.977612_g76805_i0 PRJNA533623 78586 195 7.977612 15.5563434 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 55.8 4.24e-7   NR HKH84166.1 2448054 g76805 i0 47.7 1.35384615384615 44 23 67.7 0 170 39 5 48 HKH84166.1 c-type cytochrome [Gemmatimonadales bacterium] diamond 264 55.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28562196 28562196 PRJNA533623_P_NODE_71847_length_214_cov_3.104575_g70066_i0 PRJNA533623 71847 214 3.104575 6.6437905 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42 0.049   NR MBP6775025.1 2026741 g70066 i0 46.2 0.911214953271028 65 23 84.1 3 5 184 104 161 MBP6775025.1 PQQ-binding-like beta-propeller repeat protein [Gemmatimonadaceae bacterium] diamond 195 42 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28782949 28782949 PRJNA533623_P_NODE_79027_length_193_cov_2.515152_g77246_i0 PRJNA533623 79027 193 2.515152 4.85424336 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 60.5 9.92e-9   NR MCZ6825238.1 2026742 g77246 i0 58.3 0.746113989637306 48 19 73.1 1 48 188 47 94 MCZ6825238.1 isoaspartyl peptidase/L-asparaginase [Gemmatimonadota bacterium] diamond 144 60.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28909103 28909103 PRJNA533623_P_NODE_7528_length_846_cov_13.173248_g6112_i0 PRJNA533623 7528 846 13.173248 111.44567808 Longimicrobiales bacterium 2910168 Bacteria Bacteria 61.2 1.91e-7   NR MDX1567048.1 2910168 g6112 i0 26.7 0.663120567375887 187 111 66.3 4 231 791 5 165 MDX1567048.1 ankyrin repeat domain-containing protein [Longimicrobiales bacterium] diamond 561 61.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
28941209 28941209 PRJNA533623_P_NODE_69708_length_221_cov_1.418750_g67927_i0 PRJNA533623 69708 221 1.41875 3.1354375 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 71.6 1.05e-12   NR HEY7394090.1 2026741 g67927 i0 83.3 0.570135746606335 42 7 57 0 86 211 26 67 HEY7394090.1 AI-2E family transporter [Gemmatimonadaceae bacterium] diamond 126 71.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30172495 30172495 PRJNA533623_P_NODE_9732_length_751_cov_9.215942_g8187_i0 PRJNA533623 9732 751 9.215942 69.21172442 Longimicrobiales bacterium 2910168 Bacteria Bacteria 127 1.36e-29   NR HUH11828.1 2910168 g8187 i0 69.3 0.715046604527297 88 27 35.2 0 742 479 548 635 HUH11828.1 ATP-binding protein [Longimicrobiales bacterium] diamond 537 127 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
30282669 30282669 PRJNA533623_P_NODE_17792_length_556_cov_11.042424_g16060_i0 PRJNA533623 17792 556 11.042424 61.39587744 Pseudomonadati 3379134 Bacteria Bacteria 68.2 1.06e-9   NR HET9334152.1 2026742 g16060 i0 42.3 4.49460431654676 97 49 52.3 1 365 75 178 267 HET9334152.1 adenylate/guanylate cyclase domain-containing protein [Gemmatimonadota bacterium] diamond 2499 68.6 0.994169096209913 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30394186 30394186 PRJNA533623_P_NODE_70593_length_218_cov_2.401274_g68812_i0 PRJNA533623 70593 218 2.401274 5.23477732 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 70.5 3.24e-12   NR HET9465387.1 2448054 g68812 i0 66 2.65596330275229 53 18 72.9 0 54 212 4 56 HET9465387.1 UbiA family prenyltransferase [Gemmatimonadales bacterium] diamond 579 70.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30646260 30646260 PRJNA533623_P_NODE_60073_length_253_cov_18.927083_g58293_i0 PRJNA533623 60073 253 18.927083 47.88551999 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 122 1.5e-31   NR HEU4681531.1 2448054 g58293 i0 83.3 0.924901185770751 78 8 86.6 2 31 249 123 200 HEU4681531.1 acetate--CoA ligase family protein [Gemmatimonadales bacterium] diamond 234 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30709581 30709581 PRJNA533623_P_NODE_30794_length_407_cov_27.008671_g29023_i0 PRJNA533623 30794 407 27.008671 109.92529097 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 117 1.23e-30   NR HZA91256.1 2448054 g29023 i0 78.4 1.63636363636364 74 16 54.5 0 305 84 1 74 HZA91256.1 transcription antitermination factor NusB [Gemmatimonadales bacterium] diamond 666 117 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31293361 31293361 PRJNA533623_P_NODE_20235_length_519_cov_9.709607_g18488_i0 PRJNA533623 20235 519 9.709607 50.39286033 Bacteria 2 Bacteria Bacteria 151 2.2199999999999996e-41   NR MYD64103.1 2026742 g18488 i0 45 4.76878612716763 169 92 97.7 1 519 13 161 328 MYD64103.1 aldo/keto reductase [Gemmatimonadota bacterium] diamond 2475 151 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31388472 31388472 PRJNA533623_P_NODE_65276_length_235_cov_3.672414_g63495_i0 PRJNA533623 65276 235 3.672414 8.6301729 FCB group 1783270 Bacteria Bacteria 115 1.87e-29   NR MDB4949148.1 2026742 g63495 i0 73.5 2.60425531914894 68 18 86.8 0 24 227 157 224 MDB4949148.1 hypothetical protein [Gemmatimonadota bacterium] diamond 612 116 0.991379310344828 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31531680 31531680 PRJNA533623_P_NODE_60756_length_251_cov_2.736842_g58976_i0 PRJNA533623 60756 251 2.736842 6.86947342 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 113 1.05e-28   NR HEV8454004.1 2448054 g58976 i0 77.5 0.848605577689243 71 16 84.9 0 228 16 28 98 HEV8454004.1 hypothetical protein [Gemmatimonadales bacterium] diamond 213 113 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31721269 31721269 PRJNA533623_P_NODE_30457_length_410_cov_8.822350_g28687_i0 PRJNA533623 30457 410 8.82235 36.171635 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 165 2.83e-45   NR HWP70502.1 2026741 g28687 i0 70.5 1.78536585365854 122 36 89.3 0 22 387 424 545 HWP70502.1 ABC transporter permease [Gemmatimonadaceae bacterium] diamond 732 165 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31752822 31752822 PRJNA533623_P_NODE_39657_length_346_cov_15.810526_g37883_i0 PRJNA533623 39657 346 15.810526 54.70441996 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 181 3.04e-50   NR HEV8122806.1 2448054 g37883 i0 87.5 0.901734104046243 104 13 90.2 0 23 334 493 596 HEV8122806.1 protein kinase [Gemmatimonadales bacterium] diamond 312 181 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32449204 32449204 PRJNA533623_P_NODE_36479_length_366_cov_6.036066_g34707_i0 PRJNA533623 36479 366 6.036066 22.09200156 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 96.3 1.01e-20   NR HTE44537.1 2026741 g34707 i0 55.8 2.5 77 34 63.1 0 3 233 303 379 HTE44537.1 glutathionylspermidine synthase family protein [Gemmatimonadaceae bacterium] diamond 915 96.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32716349 32716349 PRJNA533623_P_NODE_74120_length_208_cov_12.088435_g72339_i0 PRJNA533623 74120 208 12.088435 25.1439448 Bacteria 2 Bacteria Bacteria 42.4 0.0328   NR MCY3734929.1 2026741 g72339 i0 43.4 2.71153846153846 53 28 73.6 1 1 153 70 122 MCY3734929.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 564 42.7 0.992974238875878 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32890218 32890218 PRJNA533623_P_NODE_50200_length_293_cov_6.568966_g48421_i0 PRJNA533623 50200 293 6.568966 19.24707038 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 44.3 0.0192   NR HEY6784045.1 2448054 g48421 i0 41.7 0.614334470989761 60 32 58.4 1 25 195 235 294 HEY6784045.1 AAA family ATPase [Gemmatimonadales bacterium] diamond 180 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;