RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA533623", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA533623 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1117580 1117580 PRJNA533623_P_NODE_14981_length_609_cov_12.151460_g13279_i0 PRJNA533623 14981 609 12.15146 74.0023914 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 326 4.08e-109   NR MFA6024205.1 2044595 g13279 i0 87.6 0.911330049261084 185 23 91.1 0 14 568 157 341 MFA6024205.1 type I glyceraldehyde-3-phosphate dehydrogenase [Candidatus Altimarinota bacterium] diamond 555 326 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
26634528 26634528 PRJNA533623_P_NODE_56441_length_267_cov_5.684466_g54661_i0 PRJNA533623 56441 267 5.684466 15.17752422 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 94.7 1.74e-20   NR NDK10194.1 2044595 g54661 i0 63.8 2.31460674157303 69 25 77.5 0 17 223 287 355 NDK10194.1 radical SAM protein [Candidatus Altimarinota bacterium] diamond 618 94.7 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29856605 29856605 PRJNA533623_P_NODE_46831_length_309_cov_2.112903_g45053_i0 PRJNA533623 46831 309 2.112903 6.52887027 Candidatus Gracilibacteria bacterium GN 2044595 Bacteria Bacteria 152 6.87e-41   NR RAL56447.1 1914866 g45053 i0 97.4 0.747572815533981 77 2 74.8 0 14 244 459 535 RAL56447.1 alanine--tRNA ligase [Candidatus Gracilibacteria bacterium GN02-873] diamond 231 152 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium GN02-873

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;