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contig_metadata

23 rows where bioproject = "PRJNA533114" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 23 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA533114 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25343964 25343964 PRJNA533114_P_NODE_83440_length_266_cov_1.253886_g83188_i0 PRJNA533114 83440 266 1.253886 3.33533676 Pseudomonadati 3379134 Bacteria Bacteria 52.8 0.024   NTclustered gi|2893358392|emb|OZ220683.1| 2026742 g83188 i0 100 0.210526315789474 28 0 11 0 101 128 3218968 3218995 MAG: Gemmatimonadota bacterium isolate c4f6f2ca-7934-440c-833b-e1b430e415c5 genome assembly, chromosome: 1 blastn 56 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27235735 27235735 PRJNA533114_P_NODE_61983_length_303_cov_1.213043_g61731_i0 PRJNA533114 61983 303 1.213043 3.67552029 Longimicrobiales bacterium 2910168 Bacteria Bacteria 47.8 0.00123   NR MDT8370208.1 2910168 g61731 i0 27.7 4.85148514851485 101 72 99 1 3 302 42 142 MDT8370208.1 serpin family protein [Longimicrobiales bacterium] diamond 1470 47.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
27330648 27330648 PRJNA533114_P_NODE_37263_length_378_cov_1.465574_g37011_i0 PRJNA533114 37263 378 1.465574 5.53986972 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 157 6.699999999999998e-44   NR MBL8960531.1 2026742 g37011 i0 70.1 4.03174603174603 127 37 100 1 378 1 246 372 MBL8960531.1 S8 family peptidase [Gemmatimonadota bacterium] diamond 1524 157 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27393822 27393822 PRJNA533114_P_NODE_104203_length_247_cov_0.885057_g103951_i0 PRJNA533114 104203 247 0.885057 2.18609079 Gemmatimonas sp. 1962908 Bacteria Bacteria 70.9 4.25e-12   NR WP_409926533.1 1962908 g103951 i0 57.1 4.62753036437247 63 27 76.5 0 246 58 313 375 WP_409926533.1 oxaloacetate-decarboxylating malate dehydrogenase, partial [Gemmatimonas sp.] diamond 1143 70.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
27535076 27535076 PRJNA533114_P_NODE_103563_length_247_cov_1.327586_g103311_i0 PRJNA533114 103563 247 1.327586 3.27913742 Pseudomonadati 3379134 Bacteria Bacteria 53.1 5.92e-6   NR HET7040534.1 2448054 g103311 i0 47.7 1.32388663967611 65 25 78.9 2 235 41 110 165 HET7040534.1 phosphate ABC transporter substrate-binding protein PstS [Gemmatimonadales bacterium] diamond 327 53.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27741378 27741378 PRJNA533114_P_NODE_41844_length_360_cov_0.902439_g41592_i0 PRJNA533114 41844 360 0.902439 3.2487804 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 107 2.24e-24   NR HET6231204.1 3047548 g41592 i0 46 1.05 126 62 100 3 360 1 494 619 HET6231204.1 leishmanolysin-related zinc metalloendopeptidase [Longimicrobiaceae bacterium] diamond 378 107 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
28467408 28467408 PRJNA533114_P_NODE_45886_length_346_cov_1.128205_g45634_i0 PRJNA533114 45886 346 1.128205 3.9035893 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 43.9 0.042   NR HET9066388.1 2448054 g45634 i0 56.7 0.260115606936416 30 13 26 0 46 135 176 205 HET9066388.1 glycosyltransferase [Gemmatimonadales bacterium] diamond 90 43.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28513849 28513849 PRJNA533114_P_NODE_41227_length_362_cov_1.266436_g40975_i0 PRJNA533114 41227 362 1.266436 4.58449832 Bacteria 2 Bacteria Bacteria 49.3 1.35e-4   NR MFH1568199.1 2026742 g40975 i0 46.7 1.5 45 24 37.3 0 228 362 7 51 MFH1568199.1 hypothetical protein [Gemmatimonadota bacterium] diamond 543 49.7 0.991951710261569 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28530592 28530592 PRJNA533114_P_NODE_58527_length_311_cov_1.214286_g58275_i0 PRJNA533114 58527 311 1.214286 3.77642946 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 127 1.1999999999999999e-32   NR MBL8960531.1 2026742 g58275 i0 71.1 4.67845659163987 97 28 93.6 0 291 1 241 337 MBL8960531.1 S8 family peptidase [Gemmatimonadota bacterium] diamond 1455 127 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28751418 28751418 PRJNA533114_P_NODE_49027_length_336_cov_1.463878_g48775_i0 PRJNA533114 49027 336 1.463878 4.91863008 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 71.2 1.1e-11   NR NNE08319.1 2026742 g48775 i0 34.8 1 112 68 99.1 3 333 1 63 170 NNE08319.1 T9SS type A sorting domain-containing protein [Gemmatimonadota bacterium] diamond 336 71.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29035719 29035719 PRJNA533114_P_NODE_106848_length_246_cov_0.890173_g106596_i0 PRJNA533114 106848 246 0.890173 2.18982558 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 75.5 3.58e-14   NR HEX9482959.1 2026741 g106596 i0 50 0.926829268292683 76 38 92.7 0 242 15 188 263 HEX9482959.1 Hsp20 family protein [Gemmatimonadaceae bacterium] diamond 228 75.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29666740 29666740 PRJNA533114_P_NODE_45330_length_348_cov_0.840000_g45078_i0 PRJNA533114 45330 348 0.84 2.9232 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 54.7 5.92e-6   NR HEU5050793.1 2448054 g45078 i0 40.9 0.758620689655172 88 47 73.3 3 256 2 13 98 HEU5050793.1 PDZ domain-containing protein [Gemmatimonadales bacterium] diamond 264 54.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29744995 29744995 PRJNA533114_P_NODE_67250_length_291_cov_1.743119_g66998_i0 PRJNA533114 67250 291 1.743119 5.07247629 Bacteria 2 Bacteria Bacteria 48.5 5.71e-4   NR MDH3205933.1 2026742 g66998 i0 64.9 1.22680412371134 37 13 38.1 0 174 284 6 42 MDH3205933.1 acyl-CoA dehydrogenase [Gemmatimonadota bacterium] diamond 357 48.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29793172 29793172 PRJNA533114_P_NODE_3051_length_1194_cov_2.180196_g2914_i0 PRJNA533114 3051 1194 2.180196 26.031540240000002 Longimicrobiales bacterium 2910168 Bacteria Bacteria 52 0.00329   NR MFO8175481.1 2910168 g2914 i0 32.2 0.444723618090452 177 97 44.2 5 422 949 159 313 MFO8175481.1 filamin/ABP280 repeat domain-containing protein [Longimicrobiales bacterium] diamond 531 52 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
30457203 30457203 PRJNA533114_P_NODE_33233_length_398_cov_1.418462_g32981_i0 PRJNA533114 33233 398 1.418462 5.64547876 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 52.4 7.99e-5   NR MDH5588617.1 2026742 g32981 i0 63.9 0.271356783919598 36 13 27.1 0 397 290 400 435 MDH5588617.1 TRZ/ATZ family hydrolase [Gemmatimonadota bacterium] diamond 108 52.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31008963 31008963 PRJNA533114_P_NODE_113234_length_244_cov_0.900585_g112982_i0 PRJNA533114 113234 244 0.900585 2.1974274 Pseudomonadati 3379134 Bacteria Bacteria 81.3 1.06e-16   NR MFN2635600.1 2026741 g112982 i0 53.4 4.38934426229508 73 32 87.3 1 29 241 6 78 MFN2635600.1 SGNH/GDSL hydrolase family protein [Gemmatimonadaceae bacterium] diamond 1071 82 0.991463414634146 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31103633 31103633 PRJNA533114_P_NODE_8875_length_755_cov_2.083578_g8659_i0 PRJNA533114 8875 755 2.083578 15.7310139 Bacteria 2 Bacteria Bacteria 101 2.5599999999999998e-23   NR MCY4352252.1 2026742 g8659 i0 49.5 2.04238410596026 93 45 37 1 296 18 4 94 MCY4352252.1 Hsp20/alpha crystallin family protein [Gemmatimonadota bacterium] diamond 1542 101 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31563379 31563379 PRJNA533114_P_NODE_96596_length_250_cov_0.870056_g96344_i0 PRJNA533114 96596 250 0.870056 2.17514 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 43.5 0.022   NR HZD86152.1 2026741 g96344 i0 38.1 0.756 63 38 75.6 1 52 240 561 622 HZD86152.1 RNB domain-containing ribonuclease [Gemmatimonadaceae bacterium] diamond 189 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31594930 31594930 PRJNA533114_P_NODE_62476_length_302_cov_1.008734_g62224_i0 PRJNA533114 62476 302 1.008734 3.04637668 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 80.9 2.34e-15   NR MEO7086311.1 2026741 g62224 i0 55.4 0.645695364238411 65 28 64.6 1 300 106 340 403 MEO7086311.1 serine hydrolase domain-containing protein [Gemmatimonadaceae bacterium] diamond 195 80.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32020976 32020976 PRJNA533114_P_NODE_34098_length_394_cov_0.828660_g33846_i0 PRJNA533114 34098 394 0.82866 3.2649204 Pseudomonadati 3379134 Bacteria Bacteria 130 4.709999999999999e-32   NR HVB31985.1 2026741 g33846 i0 49.6 2.83248730964467 119 58 89.1 2 394 44 173 291 HVB31985.1 prolyl oligopeptidase family serine peptidase [Gemmatimonadaceae bacterium] diamond 1116 131 0.99236641221374 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32480628 32480628 PRJNA533114_P_NODE_112659_length_244_cov_0.900585_g112407_i0 PRJNA533114 112659 244 0.900585 2.1974274 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 45.8 0.00289   NR HET9133845.1 2448054 g112407 i0 36.6 1.63524590163934 82 45 94.7 3 237 7 140 219 HET9133845.1 DMT family transporter [Gemmatimonadales bacterium] diamond 399 45.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32512451 32512451 PRJNA533114_P_NODE_121679_length_238_cov_2.333333_g121427_i0 PRJNA533114 121679 238 2.333333 5.55333254 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 74.7 1.62e-13   NR MBW7934491.1 2026741 g121427 i0 50.7 0.894957983193277 71 32 89.5 1 235 23 148 215 MBW7934491.1 thiamine pyrophosphate-binding protein [Gemmatimonadaceae bacterium] diamond 213 74.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32638069 32638069 PRJNA533114_P_NODE_44100_length_352_cov_1.078853_g43848_i0 PRJNA533114 44100 352 1.078853 3.79756256 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 47.8 9.4e-4   NR HEY7566466.1 2026741 g43848 i0 30.1 0.707386363636364 83 57 70.7 1 254 6 31 112 HEY7566466.1 CHRD domain-containing protein [Gemmatimonadaceae bacterium] diamond 249 47.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;