RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA533114", tax_phylum = "Artverviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Artverviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA533114 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5609228 5609228 PRJNA533114_P_NODE_71745_length_284_cov_1.459716_g71493_i0 PRJNA533114 71745 284 1.459716 4.14559344 Lentivirus humimdef1 3418650 Viruses Viruses 54.7 0.007   NTclustered gi|1039031651|gb|KX259099.1| 11676 g71493 i0 100 0.102112676056338 29 0 10 0 121 149 207 235 HIV-1 clone 10KKT6-9566 from South Korea nef protein (nef) gene, complete cds blastn 29 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
10708955 10708955 PRJNA533114_P_NODE_2929_length_1212_cov_1.465320_g2795_i0 PRJNA533114 2929 1212 1.46532 17.7596784 Gammaretrovirus murleu 3428959 Viruses Viruses 2037 0   NTclustered gi|535516|gb|U13766.1|MLU13766 11786 g2795 i0 96.965 99.1155115511551 1219 28 100 5 1 1212 8169 6953 Murine leukemia virus MCF1233, complete genome blastn 120128 2037 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;