RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA533114", tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 2 ✖

bioproject 1

  • PRJNA533114 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2393040 2393040 PRJNA533114_P_NODE_34222_length_393_cov_1.262500_g33970_i0 PRJNA533114 34222 393 1.2625 4.961625 Candidatus Blochmanniella 203804 Bacteria Bacteria 52.8 0.038   NTclustered gi|2224893745|gb|CP095401.1| 101534 g33970 i0 100 0.712468193384224 28 0 7 0 270 297 710562 710535 Candidatus Blochmanniella pennsylvanica isolate B_Penn7 chromosome, complete genome blastn 280 52.8 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Blochmanniella Candidatus Blochmanniella pennsylvanica
21519628 21519628 PRJNA533114_P_NODE_61277_length_304_cov_2.722944_g61025_i0 PRJNA533114 61277 304 2.722944 8.27774976 Candidatus Williamhamiltonella 568987 Bacteria Bacteria 60.2 1.69e-4   NTclustered gi|1389176145|gb|CP021663.1| 138072 g61025 i0 78.351 3.54934210526316 97 17 31 3 79 173 209250 209156 Candidatus Hamiltonella defensa strain 5D chromosome blastn 1079 60.2 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Williamhamiltonella Candidatus Williamhamiltonella defendens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;