RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA533114", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA533114 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26807996 26807996 PRJNA533114_P_NODE_62901_length_301_cov_1.144737_g62649_i0 PRJNA533114 62901 301 1.144737 3.44565837 Pseudomonadati 3379134 Bacteria Bacteria 45.8 0.00426   NR NLX25989.1 1932692 g62649 i0 36.8 1.51495016611296 76 43 74.8 3 265 41 93 164 NLX25989.1 50S ribosomal protein L25 [Lentisphaerota bacterium] diamond 456 45.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
28119862 28119862 PRJNA533114_P_NODE_109905_length_245_cov_0.895349_g109653_i0 PRJNA533114 109905 245 0.895349 2.19360505 Lentisphaerota bacterium 1932692 Bacteria Bacteria 46.6 0.0017   NR MFH0878361.1 1932692 g109653 i0 40.3 0.820408163265306 67 37 80.8 2 231 34 116 180 MFH0878361.1 beta-galactosidase [Lentisphaerota bacterium] diamond 201 46.6 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
28324290 28324290 PRJNA533114_P_NODE_112546_length_244_cov_0.900585_g112294_i0 PRJNA533114 112546 244 0.900585 2.1974274 Pseudomonadati 3379134 Bacteria Bacteria 62.4 4.6e-9   NR HHX98643.1 1932692 g112294 i0 43.8 2.93852459016393 80 43 97.1 2 241 5 432 510 HHX98643.1 redoxin domain-containing protein [Lentisphaerota bacterium] diamond 717 62.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
32037608 32037608 PRJNA533114_P_NODE_62238_length_302_cov_1.698690_g61986_i0 PRJNA533114 62238 302 1.69869 5.1300438 Lentisphaerota bacterium 1932692 Bacteria Bacteria 45.4 0.00879   NR MBM4156011.1 1932692 g61986 i0 36.7 0.78476821192053 79 48 77.5 2 61 294 1061 1138 MBM4156011.1 hypothetical protein [Lentisphaerota bacterium] diamond 237 45.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;