RNAquarium Metadata Server
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contig_metadata

14 rows where bioproject = "PRJNA533114", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 14 ✖

tax_clade 1

  • Metamonada · 14 ✖

bioproject 1

  • PRJNA533114 · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1779780 1779780 PRJNA533114_P_NODE_109782_length_245_cov_0.895349_g109530_i0 PRJNA533114 109782 245 0.895349 2.19360505 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.022   NTclustered gi|2806446952|ref|XM_068498964.1| 1144522 g109530 i0 100 0.114285714285714 28 0 11 0 93 120 249 222 Tritrichomonas foetus uncharacterized protein (TRFO_16424), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
3055473 3055473 PRJNA533114_P_NODE_11563_length_664_cov_2.609137_g11325_i0 PRJNA533114 11563 664 2.609137 17.32466968 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 84.2 2.34e-11   NTclustered gi|2806440908|ref|XM_068514153.1| 1144522 g11325 i0 89.552 1.05421686746988 67 5 10 2 325 390 219 154 Tritrichomonas foetus DnaJ subfamily B member 5 (TRFO_42130), partial mRNA blastn 700 84.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
8158238 8158238 PRJNA533114_P_NODE_64467_length_297_cov_1.375000_g64215_i0 PRJNA533114 64467 297 1.375 4.08375 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 56.5 0.002   NTclustered gi|2794863932|ref|XM_067915075.1| 135588 g64215 i0 92.683 0.138047138047138 41 0 14 2 144 184 1325 1288 Histomonas meleagridis beta-tubulin (GO595_002193), partial mRNA blastn 41 56.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
10046114 10046114 PRJNA533114_P_NODE_77048_length_276_cov_1.137931_g76796_i0 PRJNA533114 77048 276 1.137931 3.14068956 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 72 2.72e-12   NR XP_068360135.1 1144522 g76796 i0 55.7 1.35869565217391 61 27 66.3 0 94 276 6 66 XP_068360135.1 fatty aldehyde dehydrogenase variant form [Tritrichomonas foetus] diamond 375 72 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
15807890 15807890 PRJNA533114_P_NODE_50793_length_331_cov_1.193798_g50541_i0 PRJNA533114 50793 331 1.193798 3.95147138 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 115 1.52e-29   NR XP_001580529.1 412133 g50541 i0 45.5 3.97885196374622 110 60 99.7 0 330 1 22 131 XP_001580529.1 GTPase protein [Trichomonas vaginalis G3] diamond 1317 115 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
26919589 26919589 PRJNA533114_P_NODE_8322_length_778_cov_1.702128_g8110_i0 PRJNA533114 8322 778 1.702128 13.24255584 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 109 4.3e-23   NR XP_068361143.1 1144522 g8110 i0 29.7 0.987146529562982 256 169 96.4 5 750 1 499 749 XP_068361143.1 uncharacterized protein TRFO_23625 [Tritrichomonas foetus] diamond 768 109 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
27077684 27077684 PRJNA533114_P_NODE_41202_length_362_cov_1.384083_g40950_i0 PRJNA533114 41202 362 1.384083 5.01038046 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 122 3.1299999999999996e-32   NR XP_001317232.1 412133 g40950 i0 47.5 18.1740331491713 122 60 97.8 1 358 5 5 126 XP_001317232.1 GTPase, Ras family, Rab subfamily [Trichomonas vaginalis G3] diamond 6579 122 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28608584 28608584 PRJNA533114_P_NODE_104007_length_247_cov_0.885057_g103755_i0 PRJNA533114 104007 247 0.885057 2.18609079 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.1 4.14e-4   NR XP_001326807.1 412133 g103755 i0 37.5 1.31174089068826 56 34 66.8 1 1 165 48 103 XP_001326807.1 acetylation-dependent protein binding [Trichomonas vaginalis G3] diamond 324 48.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28719866 28719866 PRJNA533114_P_NODE_100867_length_248_cov_1.422857_g100615_i0 PRJNA533114 100867 248 1.422857 3.52868536 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 50.8 4.28e-5   NR XP_001307817.1 412133 g100615 i0 36.5 2.46774193548387 74 36 78.6 3 247 53 162 233 XP_001307817.1 perineurial glial growth protein family [Trichomonas vaginalis G3] diamond 612 50.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28814222 28814222 PRJNA533114_P_NODE_108608_length_245_cov_1.668605_g108356_i0 PRJNA533114 108608 245 1.668605 4.08808225 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 89.4 9.31e-19   NR XP_067776507.1 135588 g108356 i0 54.3 0.857142857142857 70 32 85.7 0 244 35 279 348 XP_067776507.1 histone deacetylase Rpd3 [Histomonas meleagridis] diamond 210 89.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30614716 30614716 PRJNA533114_P_NODE_70273_length_286_cov_2.169014_g70021_i0 PRJNA533114 70273 286 2.169014 6.20338004 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 45.4 0.00538   NR XP_001305731.1 412133 g70021 i0 59.4 0.335664335664336 32 13 33.6 0 165 260 39 70 XP_001305731.1 Rab GTPase binding [Trichomonas vaginalis G3] diamond 96 45.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31151534 31151534 PRJNA533114_P_NODE_55215_length_319_cov_1.252033_g54963_i0 PRJNA533114 55215 319 1.252033 3.99398527 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 62 7.07e-9   NR XP_068361670.1 1144522 g54963 i0 40.4 1.74921630094044 94 48 84.6 5 318 49 128 217 XP_068361670.1 Casein kinase II subunit beta [Tritrichomonas foetus] diamond 558 62 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31278310 31278310 PRJNA533114_P_NODE_71955_length_284_cov_1.165877_g71703_i0 PRJNA533114 71955 284 1.165877 3.31109068 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 42 0.0342   NR XP_001329047.1 412133 g71703 i0 43.4 0.559859154929577 53 25 56 1 174 16 5 52 XP_001329047.1 mRNA splicing, via spliceosome [Trichomonas vaginalis G3] diamond 159 42 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32037592 32037592 PRJNA533114_P_NODE_50878_length_331_cov_0.895349_g50626_i0 PRJNA533114 50878 331 0.895349 2.96360519 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 71.2 1.06e-12   NR XP_001327433.1 412133 g50626 i0 35.1 1.00604229607251 111 70 98.8 1 329 3 24 134 XP_001327433.1 GTPase protein [Trichomonas vaginalis G3] diamond 333 71.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;