RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA532380" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA532380 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3668746 3668746 PRJNA532380_P_NODE_17203_length_217_cov_1.238095_g16878_i0 PRJNA532380 17203 217 1.238095 2.68666615 Truepera 332248 Bacteria Bacteria 263 8.13e-66   NTclustered gi|470486385|ref|NR_076754.1| 332249 g16878 i0 88.837 152.281105990783 215 22 99 2 4 217 281 494 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 33045 263 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
4945644 4945644 PRJNA532380_P_NODE_28304_length_168_cov_0.873950_g27979_i0 PRJNA532380 28304 168 0.87395 1.468236 Deinococcus 1298 Bacteria Bacteria 311 2.11e-80   NTclustered gi|2264081587|gb|CP094462.1| 1299 g27979 i0 100 173.517857142857 168 0 100 0 1 168 880482 880649 Deinococcus radiodurans strain BRD125 chromosome 1, complete sequence blastn 29151 311 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans
17695429 17695429 PRJNA532380_P_NODE_30474_length_165_cov_1.344828_g30149_i0 PRJNA532380 30474 165 1.344828 2.2189662 Deinococcus 1298 Bacteria Bacteria 305 9.59e-79   NTclustered gi|2264081587|gb|CP094462.1| 1299 g30149 i0 100 211.672727272727 165 0 100 0 1 165 1217378 1217214 Deinococcus radiodurans strain BRD125 chromosome 1, complete sequence blastn 34926 305 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;