RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA532380", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA532380 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28214374 28214374 PRJNA532380_P_NODE_24906_length_178_cov_2.418605_g24581_i0 PRJNA532380 24906 178 2.418605 4.3051169 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 40.4 0.0168   NR MBI5582892.1 2026735 g24581 i0 40 0.674157303370786 40 24 67.4 0 32 151 8 47 MBI5582892.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 120 40.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29382895 29382895 PRJNA532380_P_NODE_8249_length_330_cov_1.110320_g7924_i0 PRJNA532380 8249 330 1.11032 3.664056 Hyalangium rubrum 3103134 Bacteria Bacteria 43.1 0.0189   NR WP_321543940.1 3103134 g7924 i0 36.4 0.7 77 46 68.2 2 100 324 28 103 WP_321543940.1 hypothetical protein [Hyalangium rubrum] diamond 231 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium rubrum
30646071 30646071 PRJNA532380_P_NODE_14933_length_234_cov_1.075676_g14608_i0 PRJNA532380 14933 234 1.075676 2.51708184 Myxococcota bacterium 2818507 Bacteria Bacteria 43.1 0.0225   NR MEZ0314993.1 2818507 g14608 i0 52.9 0.435897435897436 34 16 43.6 0 36 137 80 113 MEZ0314993.1 hypothetical protein [Myxococcota bacterium] diamond 102 43.1 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;