RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA532380", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

  • Metazoa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA532380 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
504273 504273 PRJNA532380_P_NODE_6001_length_399_cov_3.477143_g5676_i0 PRJNA532380 6001 399 3.477143 13.87380057 Strongyloides papillosus 174720 Nematoda Nematoda 202 3.59e-47   NTclustered gi|690018840|emb|LM526136.1| 174720 g5676 i0 79.649 6.67669172932331 285 54 71 4 65 347 7759 8041 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000493 blastn 2664 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
28625223 28625223 PRJNA532380_P_NODE_17207_length_217_cov_1.238095_g16882_i0 PRJNA532380 17207 217 1.238095 2.68666615 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 52 1.1e-5   NR CAD5220209.1 6326 g16882 i0 38.3 0.829493087557604 60 37 82.9 0 6 185 179 238 CAD5220209.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 180 52 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
28656753 28656753 PRJNA532380_P_NODE_32487_length_163_cov_0.912281_g32162_i0 PRJNA532380 32487 163 0.912281 1.48701803 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 55.8 2.86e-7   NR CAD5234675.1 6326 g32162 i0 50 2.57668711656442 54 26 99.4 1 1 162 238 290 CAD5234675.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 420 55.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
28877556 28877556 PRJNA532380_P_NODE_19268_length_205_cov_1.333333_g18943_i0 PRJNA532380 19268 205 1.333333 2.73333265 Pristionchus mayeri 1317129 Nematoda Nematoda 51.2 1.31e-5   NR GMR47851.1 1317129 g18943 i0 45.9 0.892682926829268 61 31 86.3 1 204 28 22 82 GMR47851.1 hypothetical protein PMAYCL1PPCAC_18046, partial [Pristionchus mayeri] diamond 183 51.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus mayeri
30345969 30345969 PRJNA532380_P_NODE_20932_length_196_cov_1.639456_g20607_i0 PRJNA532380 20932 196 1.639456 3.21333376 Trichinella 6333 Nematoda Nematoda 102 5.0799999999999996e-24   NR KAL1242640.1 6334 g20607 i0 64.6 3.91836734693878 65 23 99.5 0 195 1 70 134 KAL1242640.1 Aspartic protease [Trichinella spiralis] diamond 768 102 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
30471953 30471953 PRJNA532380_P_NODE_31453_length_164_cov_0.904348_g31128_i0 PRJNA532380 31453 164 0.904348 1.48313072 Metazoa 33208 Nematoda Nematoda 89.7 2.54e-19   NR VBB30036.1 6277 g31128 i0 83 287.963414634146 53 9 97 0 2 160 21 73 VBB30036.1 unnamed protein product [Acanthocheilonema viteae] diamond 47226 90.5 0.991160220994475 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
30661392 30661392 PRJNA532380_P_NODE_17133_length_217_cov_1.857143_g16808_i0 PRJNA532380 17133 217 1.857143 4.03000031 Metazoa 33208 Nematoda Nematoda 56.6 2.94e-7   NR XP_024504851.1 34506 g16808 i0 50 1.36866359447005 50 25 69.1 0 3 152 15 64 XP_024504851.1 GDP-L-fucose synthase [Strongyloides ratti] diamond 297 56.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
30661397 30661397 PRJNA532380_P_NODE_9433_length_305_cov_1.218750_g9108_i0 PRJNA532380 9433 305 1.21875 3.7171875 Metazoa 33208 Nematoda Nematoda 100 3.96e-22   NR KHN78058.1 6265 g9108 i0 52.6 2.85245901639344 97 45 94.4 1 5 292 197 293 KHN78058.1 Polyadenylate-binding protein 1 [Toxocara canis] diamond 870 101 0.99009900990099 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;