RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA532380", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA532380 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27077600 27077600 PRJNA532380_P_NODE_33142_length_162_cov_0.920354_g32817_i0 PRJNA532380 33142 162 0.920354 1.49097348 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 45.8 0.00105   NR XP_001017129.3 312017 g32817 i0 70.3 0.685185185185185 37 11 68.5 0 162 52 119 155 XP_001017129.3 EF hand protein [Tetrahymena thermophila SB210] diamond 111 45.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
28941006 28941006 PRJNA532380_P_NODE_33588_length_162_cov_0.920354_g33263_i0 PRJNA532380 33588 162 0.920354 1.49097348 Halteria grandinella 5974 SAR_Eukaryotes SAR_Eukaryotes 89 5.39e-19   NR TNV81950.1 5974 g33263 i0 71.2 0.962962962962963 52 15 96.3 0 3 158 395 446 TNV81950.1 hypothetical protein FGO68_gene5546 [Halteria grandinella] diamond 156 89 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
30014508 30014508 PRJNA532380_P_NODE_28591_length_168_cov_0.873950_g28266_i0 PRJNA532380 28591 168 0.87395 1.468236 Halteria grandinella 5974 SAR_Eukaryotes SAR_Eukaryotes 78.6 1.02e-15   NR TNV73304.1 5974 g28266 i0 53.6 1 56 26 100 0 168 1 43 98 TNV73304.1 hypothetical protein FGO68_gene16622 [Halteria grandinella] diamond 168 78.6 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
31103596 31103596 PRJNA532380_P_NODE_32595_length_163_cov_0.912281_g32270_i0 PRJNA532380 32595 163 0.912281 1.48701803 Paramecium 5884 SAR_Eukaryotes SAR_Eukaryotes 55.1 1.58e-7   NR CAD8116103.1 5886 g32270 i0 56.4 2.13496932515337 39 17 71.8 0 47 163 16 54 CAD8116103.1 unnamed protein product [Paramecium primaurelia] diamond 348 55.5 0.992792792792793 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia
32764173 32764173 PRJNA532380_P_NODE_27720_length_169_cov_0.866667_g27395_i0 PRJNA532380 27720 169 0.866667 1.46466723 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 53.5 2.07e-6   NR CDW71884.1 5949 g27395 i0 42.9 0.869822485207101 49 28 87 0 15 161 153 201 CDW71884.1 cop9 signalosome complex subunit 7b [Stylonychia lemnae] diamond 147 53.5 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;