RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA532380" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA532380 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27077599 27077599 PRJNA532380_P_NODE_32942_length_162_cov_1.380531_g32617_i0 PRJNA532380 32942 162 1.380531 2.23646022 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 83.6 3.74e-17   NR PRP80070.1 1890364 g32617 i0 66.7 0.944444444444444 51 17 94.4 0 2 154 254 304 PRP80070.1 glutathione S-transferase domain-containing protein [Planoprotostelium fungivorum] diamond 153 83.6 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28355853 28355853 PRJNA532380_P_NODE_13886_length_243_cov_1.340206_g13561_i0 PRJNA532380 13886 243 1.340206 3.25670058 Eumycetozoa 142796 Evosea other_Eukaryota 70.5 6.75e-13   NR XP_636527.1 352472 g13561 i0 55.4 1.50617283950617 56 25 69.1 0 73 240 60 115 XP_636527.1 ribosomal protein L21, mitochondrial [Dictyostelium discoideum AX4] diamond 366 70.9 0.994358251057828 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
28498916 28498916 PRJNA532380_P_NODE_12447_length_258_cov_1.492823_g12122_i0 PRJNA532380 12447 258 1.492823 3.85148334 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 104 7.11e-24   NR PRP74125.1 1890364 g12122 i0 53 3.82558139534884 83 39 96.5 0 8 256 1444 1526 PRP74125.1 alpha-L-fucosidase-like [Planoprotostelium fungivorum] diamond 987 104 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31752634 31752634 PRJNA532380_P_NODE_31857_length_164_cov_0.904348_g31532_i0 PRJNA532380 31857 164 0.904348 1.48313072 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 61.6 2.77e-9   NR KYQ94461.1 361077 g31532 i0 51.9 5.92682926829268 54 26 98.8 0 163 2 217 270 KYQ94461.1 2-oxoglutarate dehydrogenase [Tieghemostelium lacteum] diamond 972 61.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;