RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA529924" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA529924 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11981984 11981984 PRJNA529924_P_NODE_3990_length_194_cov_2.260606_g3816_i0 PRJNA529924 3990 194 2.260606 4.38557564 Meira miltonrushii 1280837 Fungi Fungi 145 2.69e-30   NTclustered gi|1418864217|ref|XM_025498415.1| 1280837 g3816 i0 84.459 16.6237113402062 148 21 76 2 21 167 1107 1253 Meira miltonrushii isocitrate dehydrogenase NADP-dependent (FA14DRAFT_159847), mRNA blastn 3225 145 1 Eukaryota Opisthokonta Fungi Basidiomycota Exobasidiomycetes Exobasidiales Brachybasidiaceae Meira Meira miltonrushii
13257021 13257021 PRJNA529924_P_NODE_4471_length_175_cov_2.623288_g4297_i0 PRJNA529924 4471 175 2.623288 4.590754 Laccaria bicolor 29883 Fungi Fungi 87.9 4.04e-13   NTclustered gi|170087135|ref|XM_001874756.1| 486041 g4297 i0 86.25 2.10857142857143 80 11 46 0 13 92 172 93 Laccaria bicolor S238N-H82 uncharacterized protein (LACBIDRAFT_188038), mRNA blastn 369 87.9 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Hydnangiaceae Laccaria Laccaria bicolor
19629245 19629245 PRJNA529924_P_NODE_2896_length_259_cov_4.047826_g2722_i0 PRJNA529924 2896 259 4.047826 10.48386934 Kondoa malvinella 36055 Fungi Fungi 416 7.259999999999999e-112   NTclustered gi|6273180|gb|AF189903.1| 36055 g2722 i0 96.109 98.3281853281853 257 2 99 1 3 259 566 318 Kondoa malvinella culture CBS:6082 26S ribosomal RNA gene, partial sequence blastn 25467 416 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricostilbomycetes Agaricostilbales Kondoaceae Kondoa Kondoa malvinella
21519275 21519275 PRJNA529924_P_NODE_2097_length_343_cov_5.671975_g1923_i0 PRJNA529924 2097 343 5.671975 19.45487425 Basidiomycota 5204 Fungi Fungi 294 4.88e-75   NTclustered gi|1393510851|ref|NG_057733.1| 36055 g1923 i0 97.126 97.0699708454811 174 5 97 0 1 174 953 1126 Kondoa malvinella CBS 6082 28S rRNA gene, partial sequence; from TYPE material blastn 33295 294 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricostilbomycetes Agaricostilbales Kondoaceae Kondoa Kondoa malvinella
22179928 22179928 PRJNA529924_P_NODE_3118_length_241_cov_6.886792_g2944_i0 PRJNA529924 3118 241 6.886792 16.59716872 Malassezia restricta 76775 Fungi Fungi 412 8.64e-111   NTclustered gi|1546635598|ref|XR_003525370.1| 76775 g2944 i0 97.51 77.7136929460581 241 6 100 0 1 241 3058 3298 Malassezia restricta 28S ribosomal RNA (MRET_r0004), rRNA blastn 18729 412 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
24729218 24729218 PRJNA529924_P_NODE_2800_length_266_cov_5.029536_g2626_i0 PRJNA529924 2800 266 5.029536 13.37856576 Phlebiopsis crassa 1647769 Fungi Fungi 241 4.840000000000001e-59   NTclustered gi|528533069|dbj|AB809163.1| 1647769 g2626 i0 83.577 96.7744360902256 274 27 100 14 1 266 6265 6528 Porostereum crassum genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, IGS1, 5S rRNA, partial and complete sequence, strain: MAFF 420737 blastn 25742 241 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Phanerochaetaceae Phlebiopsis Phlebiopsis crassa
25343613 25343613 PRJNA529924_P_NODE_900_length_629_cov_5.276667_g754_i0 PRJNA529924 900 629 5.276667 33.19023543 Kondoa 36054 Fungi Fungi 741 0   NTclustered gi|1503120253|ref|NG_062142.1| 4992 g754 i0 99.752 92.3418124006359 404 1 95 0 2 405 1133 730 Kondoa miscanthi JCM 5733 18S rRNA gene, partial sequence; from TYPE material blastn 58083 741 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricostilbomycetes Agaricostilbales Kondoaceae Kondoa Kondoa miscanthi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;