RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

27 rows where bioproject = "PRJNA529241" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 27 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA529241 · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3050398 3050398 PRJNA529241_P_NODE_23463_length_439_cov_2.191542_g21189_i0 PRJNA529241 23463 439 2.191542 9.62086938 Caenorhabditis elegans 6239 Nematoda Nematoda 811 0   NTclustered gi|687865579|emb|LK927593.1| 6239 g21189 i0 100 5.7995444191344 439 0 100 0 1 439 132241 131803 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000058 blastn 2546 811 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
5602047 5602047 PRJNA529241_P_NODE_119265_length_203_cov_2.855422_g116943_i0 PRJNA529241 119265 203 2.855422 5.79650666 Caenorhabditis elegans 6239 Nematoda Nematoda 326 9.44e-85   NTclustered gi|687865721|emb|LK927708.1| 6239 g116943 i0 99.441 2.32019704433498 179 1 88 0 25 203 110534 110356 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000155 blastn 471 326 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6879032 6879032 PRJNA529241_P_NODE_474586_length_151_cov_8.096491_g472264_i0 PRJNA529241 474586 151 8.096491 12.22570141 Brugia malayi 6279 Nematoda Nematoda 52.8 0.012   NTclustered gi|2082274289|ref|XM_043076436.1| 6279 g472264 i0 100 0.185430463576159 28 0 19 0 15 42 135 108 Brugia malayi Ser/Thr protein phosphatase family protein (Bm12243), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
8153446 8153446 PRJNA529241_P_NODE_37947_length_332_cov_3.335593_g35628_i0 PRJNA529241 37947 332 3.335593 11.07416876 Caenorhabditis elegans 6239 Nematoda Nematoda 614 3.1799999999999995e-171   NTclustered gi|25167357|ref|NR_000053.1| 6239 g35628 i0 100 89.6234939759036 332 0 100 0 1 332 14 345 Caenorhabditis elegans 18S ribosomal RNA (rrn-1.1), rRNA blastn 29755 614 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
8154884 8154884 PRJNA529241_P_NODE_555607_length_150_cov_8.274336_g553285_i0 PRJNA529241 555607 150 8.274336 12.411504 Caenorhabditis elegans 6239 Nematoda Nematoda 145 1.9599999999999997e-30   NTclustered gi|3979823|emb|Z77662.1| 6239 g553285 i0 84.848 4.84666666666667 165 1 94 1 10 150 32607 32771 Caenorhabditis elegans Cosmid F47B8, complete sequence blastn 727 145 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
8767718 8767718 PRJNA529241_P_NODE_138247_length_192_cov_0.941935_g135925_i0 PRJNA529241 138247 192 0.941935 1.8085152 Metazoa 33208 Nematoda Nematoda 52.8 0.017   NTclustered gi|10444509|gb|AF302793.1|AF302793 6334 g135925 i0 100 1.21354166666667 28 0 15 0 108 135 4200 4227 Trichinella spiralis ZFH-2 mRNA, partial cds blastn 233 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
10702606 10702606 PRJNA529241_P_NODE_145629_length_188_cov_1.774834_g143307_i0 PRJNA529241 145629 188 1.774834 3.33668792 Caenorhabditis elegans 6239 Nematoda Nematoda 348 1.84e-91   NTclustered gi|1879207294|gb|MT797802.1| 6239 g143307 i0 100 86.0425531914894 188 0 100 0 1 188 270 457 Caenorhabditis elegans isolate KZN large subunit ribosomal RNA gene, partial sequence blastn 16176 348 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13256363 13256363 PRJNA529241_P_NODE_82571_length_236_cov_3.155779_g80249_i0 PRJNA529241 82571 236 3.155779 7.44763844 Caenorhabditis elegans 6239 Nematoda Nematoda 261 3.23e-65   NTclustered gi|687866471|emb|LK928635.1| 6239 g80249 i0 99.306 38.0084745762712 144 1 61 0 1 144 11183 11326 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000787 blastn 8970 261 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
15803443 15803443 PRJNA529241_P_NODE_419973_length_168_cov_1.190840_g417651_i0 PRJNA529241 419973 168 1.19084 2.0006112 Caenorhabditis elegans 6239 Nematoda Nematoda 311 2.11e-80   NTclustered gi|1734338852|ref|NM_076188.7| 6239 g417651 i0 100 12.375 168 0 100 0 1 168 4326 4493 Caenorhabditis elegans Vitellogenin-5 (vit-5), mRNA blastn 2079 311 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17078083 17078083 PRJNA529241_P_NODE_420114_length_168_cov_1.190840_g417792_i0 PRJNA529241 420114 168 1.19084 2.0006112 Caenorhabditis elegans 6239 Nematoda Nematoda 311 2.11e-80   NTclustered gi|1604722011|gb|CP038193.1| 6239 g417792 i0 100 99.5357142857143 168 0 100 0 1 168 10941 11108 Caenorhabditis elegans strain CB4856 mitochondrion, complete genome blastn 16722 311 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17078561 17078561 PRJNA529241_P_NODE_462274_length_153_cov_1.008621_g459952_i0 PRJNA529241 462274 153 1.008621 1.54319013 Caenorhabditis elegans 6239 Nematoda Nematoda 283 4.0799999999999995e-72   NTclustered gi|373220015|emb|FO081455.1| 6239 g459952 i0 100 3 153 0 100 0 1 153 1032 1184 Caenorhabditis elegans Cosmid F53G12, complete sequence blastn 459 283 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
18352574 18352574 PRJNA529241_P_NODE_446355_length_158_cov_1.289256_g444033_i0 PRJNA529241 446355 158 1.289256 2.03702448 Caenorhabditis elegans 6239 Nematoda Nematoda 292 7.07e-75   NTclustered gi|1972305994|ref|NM_076467.7| 6239 g444033 i0 100 7.69620253164557 158 0 100 0 1 158 4582 4739 Caenorhabditis elegans Vitellogenin-2 (vit-2), mRNA blastn 1216 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19624694 19624694 PRJNA529241_P_NODE_149896_length_186_cov_1.013423_g147574_i0 PRJNA529241 149896 186 1.013423 1.88496678 Caenorhabditis briggsae 6238 Nematoda Nematoda 54.7 0.004   NTclustered gi|18425354|gb|AC108521.1| 6238 g147574 i0 100 0.344086021505376 29 0 16 0 33 61 26071 26043 Caenorhabditis briggsae cosmid CB004G08, complete sequence blastn 64 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
19624935 19624935 PRJNA529241_P_NODE_17056_length_551_cov_3.420233_g14954_i0 PRJNA529241 17056 551 3.420233 18.84548383 Caenorhabditis elegans 6239 Nematoda Nematoda 1013 0   NTclustered gi|687865721|emb|LK927708.1| 6239 g14954 i0 99.819 2.62250453720508 551 1 100 0 1 551 109981 109431 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000155 blastn 1445 1013 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
20902348 20902348 PRJNA529241_P_NODE_34177_length_351_cov_7.570064_g31859_i0 PRJNA529241 34177 351 7.570064 26.57092464 Caenorhabditis elegans 6239 Nematoda Nematoda 568 2.6599999999999998e-157   NTclustered gi|687866032|emb|LK927877.1| 6239 g31859 i0 99.057 10.8888888888889 318 0 90 1 1 315 78723 79040 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000051 blastn 3822 568 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22176470 22176470 PRJNA529241_P_NODE_28518_length_389_cov_3.926136_g26212_i0 PRJNA529241 28518 389 3.926136 15.27266904 Caenorhabditis elegans 6239 Nematoda Nematoda 555 2.3199999999999998e-153   NTclustered gi|687865579|emb|LK927593.1| 6239 g26212 i0 99.67 4.94601542416452 303 1 96 0 87 389 131538 131236 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000058 blastn 1924 555 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23450707 23450707 PRJNA529241_P_NODE_127259_length_198_cov_1.322981_g124937_i0 PRJNA529241 127259 198 1.322981 2.61950238 Caenorhabditis elegans 6239 Nematoda Nematoda 366 5.4e-97   NTclustered gi|413006566|emb|Z92784.2| 6239 g124937 i0 100 95.6212121212121 198 0 100 0 1 198 28102 28299 Caenorhabditis elegans Cosmid F31C3, complete sequence blastn 18933 366 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
24726426 24726426 PRJNA529241_P_NODE_383280_length_173_cov_2.529412_g380958_i0 PRJNA529241 383280 173 2.529412 4.37588276 Caenorhabditis elegans 6239 Nematoda Nematoda 141 3.01e-29   NTclustered gi|1831506287|ref|NM_059797.5| 6239 g380958 i0 100 2.44508670520231 76 0 69 0 98 173 2334 2409 Caenorhabditis elegans Protein kinase domain-containing protein (H05L14.1), mRNA blastn 423 141 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
27077509 27077509 PRJNA529241_P_NODE_425062_length_166_cov_2.085271_g422740_i0 PRJNA529241 425062 166 2.085271 3.46154986 Ostertagia ostertagi 6317 Nematoda Nematoda 79 4.1e-16   NR KAK6031660.1 6317 g422740 i0 63.6 4.89759036144578 55 20 99.4 0 2 166 106 160 KAK6031660.1 DNA (cytosine-5-)-methyltransferase [Ostertagia ostertagi] diamond 813 79 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
27898553 27898553 PRJNA529241_P_NODE_265425_length_173_cov_4.110294_g263103_i0 PRJNA529241 265425 173 4.110294 7.11080862 Diploscapter pachys 2018661 Nematoda Nematoda 43.9 0.00569   NR PAV84478.1 2018661 g263103 i0 90 0.346820809248555 20 2 34.7 0 60 1 342 361 PAV84478.1 hypothetical protein WR25_18286 [Diploscapter pachys] diamond 60 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
29004312 29004312 PRJNA529241_P_NODE_449208_length_157_cov_1.233333_g446886_i0 PRJNA529241 449208 157 1.233333 1.93633281 Trichinella pseudospiralis 6337 Nematoda Nematoda 40 0.0173   NR KRY87651.1 6337 g446886 i0 44.2 0.821656050955414 43 24 82.2 0 157 29 17 59 KRY87651.1 hypothetical protein T4D_50 [Trichinella pseudospiralis] diamond 129 40 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
29303134 29303134 PRJNA529241_P_NODE_519889_length_151_cov_3.956140_g517567_i0 PRJNA529241 519889 151 3.95614 5.9737714 Trichuris 36086 Nematoda Nematoda 46.2 6.45e-4   NR CDW54946.1 36087 g517567 i0 76 2.48344370860927 25 6 49.7 0 150 76 37 61 CDW54946.1 laminin subunit beta 1 [Trichuris trichiura] diamond 375 46.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
29382799 29382799 PRJNA529241_P_NODE_419429_length_168_cov_2.977099_g417107_i0 PRJNA529241 419429 168 2.977099 5.00152632 Ditylenchus destructor 166010 Nematoda Nematoda 41.6 0.0313   NR KAI1698213.1 166010 g417107 i0 33.3 0.803571428571429 45 22 66.1 1 20 130 134 178 KAI1698213.1 hypothetical protein Ddc_19234 [Ditylenchus destructor] diamond 135 41.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
29982696 29982696 PRJNA529241_P_NODE_314491_length_173_cov_3.323529_g312169_i0 PRJNA529241 314491 173 3.323529 5.74970517 Cylicocyclus nassatus 53992 Nematoda Nematoda 53.1 3.1e-6   NR CAJ0600676.1 53992 g312169 i0 70.6 0.589595375722543 34 10 59 0 103 2 86 119 CAJ0600676.1 unnamed protein product [Cylicocyclus nassatus] diamond 102 53.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus
30614431 30614431 PRJNA529241_P_NODE_196173_length_173_cov_6.507353_g193851_i0 PRJNA529241 196173 173 6.507353 11.25772069 Ancylostoma duodenale 51022 Nematoda Nematoda 45.1 0.00129   NR KIH55903.1 51022 g193851 i0 81 2.1849710982659 21 4 36.4 0 63 1 73 93 KIH55903.1 putative phospholipid hydroperoxide glutathione peroxidase [Ancylostoma duodenale] diamond 378 45.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma duodenale
31025451 31025451 PRJNA529241_P_NODE_415015_length_170_cov_1.187970_g412693_i0 PRJNA529241 415015 170 1.18797 2.019549 Necator americanus 51031 Nematoda Nematoda 67.4 4.4e-12   NR ETN72287.1 51031 g412693 i0 54.9 2.71764705882353 51 23 90 0 164 12 21 71 ETN72287.1 hypothetical protein NECAME_18912 [Necator americanus] diamond 462 67.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
31483387 31483387 PRJNA529241_P_NODE_517056_length_151_cov_4.096491_g514734_i0 PRJNA529241 517056 151 4.096491 6.18570141 Rhabditida 6236 Nematoda Nematoda 43.9 6.97e-4   NR KAK5967996.1 6319 g514734 i0 64.7 5.3841059602649 34 11 65.6 1 51 149 36 69 KAK5967996.1 hypothetical protein GCK32_012980 [Trichostrongylus colubriformis] diamond 813 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Trichostrongylus Trichostrongylus colubriformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;