RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA529241" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA529241 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28861030 28861030 PRJNA529241_P_NODE_42748_length_311_cov_9.259124_g40428_i0 PRJNA529241 42748 311 9.259124 28.79587564 Pseudomonadati 3379134 Bacteria Bacteria 60.8 3.63e-8   NR WP_165833151.1 172901 g40428 i0 46.2 1.28295819935691 65 35 62.7 0 89 283 316 380 WP_165833151.1 SEL1-like repeat protein [Victivallis vadensis] diamond 399 60.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis Victivallis vadensis
31847485 31847485 PRJNA529241_P_NODE_8517_length_1005_cov_9.646694_g7192_i0 PRJNA529241 8517 1005 9.646694 96.9492747 uncultured Victivallis sp. 354118 Bacteria Bacteria 84.3 1.24e-16   NR WP_288593476.1 354118 g7192 i0 53.1 0.191044776119403 64 30 19.1 0 193 2 4 67 WP_288593476.1 hypothetical protein [uncultured Victivallis sp.] diamond 192 84.3 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis uncultured Victivallis sp.
32889924 32889924 PRJNA529241_P_NODE_319560_length_173_cov_3.264706_g317238_i0 PRJNA529241 319560 173 3.264706 5.64794138 Lentisphaeraceae bacterium 2461380 Bacteria Bacteria 40.8 0.00691   NR NQZ58809.1 2461380 g317238 i0 83.3 0.416184971098266 24 4 41.6 0 171 100 9 32 NQZ58809.1 50S ribosomal protein L34 [Lentisphaeraceae bacterium] diamond 72 40.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaerales Lentisphaeraceae   Lentisphaeraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;