RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA529241" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA529241 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18353272 18353272 PRJNA529241_P_NODE_53995_length_279_cov_10.409091_g51673_i0 PRJNA529241 53995 279 10.409091 29.04136389 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 294 3.87e-75   NTclustered gi|2031941177|emb|OD957840.1| 5763 g51673 i0 87.259 5.96415770609319 259 31 92 2 1 258 163 420 Naegleria fowleri Karachi_NF001 strain blastn 1664 294 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
22178053 22178053 PRJNA529241_P_NODE_47338_length_296_cov_6.745174_g45016_i0 PRJNA529241 47338 296 6.745174 19.96571504 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 121 7.429999999999999e-23   NTclustered gi|2031939661|emb|OD957602.1| 5763 g45016 i0 89.474 0.320945945945946 95 10 32 0 1 95 142 48 Naegleria fowleri Karachi_NF001 strain blastn 95 121 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
24727970 24727970 PRJNA529241_P_NODE_56380_length_274_cov_10.742616_g54058_i0 PRJNA529241 56380 274 10.742616 29.43476784 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 193 1.4200000000000001e-44   NTclustered gi|2031940093|emb|OD957679.1| 5763 g54058 i0 80.723 0.908759124087591 249 46 91 2 21 268 251 4 Naegleria fowleri Karachi_NF001 strain blastn 249 193 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;