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contig_metadata

18 rows where bioproject = "PRJNA529241" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 18 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA529241 · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1775742 1775742 PRJNA529241_P_NODE_380342_length_173_cov_2.573529_g378020_i0 PRJNA529241 380342 173 2.573529 4.45220517 Candidatus Criblamydia sequanensis 340071 Bacteria Bacteria 111 2.36e-20   NTclustered gi|678241437|emb|LK031773.1| 1437425 g378020 i0 94.444 0.416184971098266 72 4 42 0 4 75 43522 43451 Criblamydia sequanensis plasmid 1, strain CRIB-18, complete sequence blastn 72 111 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Candidatus Criblamydia Candidatus Criblamydia sequanensis
20902865 20902865 PRJNA529241_P_NODE_405797_length_172_cov_3.066667_g403475_i0 PRJNA529241 405797 172 3.066667 5.27466724 Neochlamydia sp. S13 1353976 Bacteria Bacteria 86.1 1.42e-12   NTclustered gi|1550189844|dbj|AP017977.1| 1353976 g403475 i0 86.842 0.441860465116279 76 10 44 0 1 76 1821853 1821928 Neochlamydia sp. S13 DNA, complete genome blastn 76 86.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia sp. S13
26602467 26602467 PRJNA529241_P_NODE_541041_length_151_cov_3.184211_g538719_i0 PRJNA529241 541041 151 3.184211 4.8081586100000004 Chlamydiales bacterium 2047757 Bacteria Bacteria 43.1 0.00788   NR MBN9378765.1 2047757 g538719 i0 76 0.496688741721854 25 6 49.7 0 151 77 25 49 MBN9378765.1 dipeptidase [Chlamydiales bacterium] diamond 75 43.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
27140320 27140320 PRJNA529241_P_NODE_283682_length_173_cov_3.786765_g281360_i0 PRJNA529241 283682 173 3.786765 6.55110345 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 50.4 2.67e-5   NR QLH36959.1 2052176 g281360 i0 88 0.433526011560694 25 3 43.4 0 172 98 154 178 QLH36959.1 MAG: hypothetical protein HWD61_13140 [Parachlamydiaceae bacterium] diamond 75 50.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
28088130 28088130 PRJNA529241_P_NODE_99605_length_218_cov_3.712707_g97283_i0 PRJNA529241 99605 218 3.712707 8.09370126 Chlamydia psittaci 1 83554 Bacteria Bacteria 40.4 0.0167   NR EPP37169.1 1238236 g97283 i0 89.5 0.261467889908257 19 2 26.1 0 143 87 1 19 EPP37169.1 hypothetical protein CP10743SC13_2441, partial [Chlamydia psittaci 10_743_SC13] diamond 57 40.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
28309275 28309275 PRJNA529241_P_NODE_405126_length_172_cov_3.355556_g402804_i0 PRJNA529241 405126 172 3.355556 5.77155632 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 51.6 1.06e-5   NR WP_059061619.1 389348 g402804 i0 96 0.436046511627907 25 1 43.6 0 75 1 3 27 WP_059061619.1 zinc-dependent alcohol dehydrogenase [Candidatus Protochlamydia naegleriophila] diamond 75 51.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
30077291 30077291 PRJNA529241_P_NODE_313652_length_173_cov_3.338235_g311330_i0 PRJNA529241 313652 173 3.338235 5.77514655 Chlamydiia bacterium 2052156 Bacteria Bacteria 47 4.65e-4   NR MDB6081688.1 2052156 g311330 i0 36.2 1.00578034682081 58 36 98.8 1 1 171 480 537 MDB6081688.1 hypothetical protein [Chlamydiia bacterium] diamond 174 47 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
30172142 30172142 PRJNA529241_P_NODE_241972_length_173_cov_4.625000_g239650_i0 PRJNA529241 241972 173 4.625 8.00125 Chlamydiota bacterium 2081524 Bacteria Bacteria 43.9 0.00568   NR MEI8301362.1 2081524 g239650 i0 80 0.433526011560694 25 5 43.4 0 98 172 138 162 MEI8301362.1 AAA family ATPase [Chlamydiota bacterium] diamond 75 43.9 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30488233 30488233 PRJNA529241_P_NODE_338933_length_173_cov_3.036765_g336611_i0 PRJNA529241 338933 173 3.036765 5.25360345 Neochlamydia sp. AcF84 2315858 Bacteria Bacteria 47 4.67e-4   NR WP_166155580.1 2315858 g336611 i0 95.7 0.815028901734104 23 1 39.9 0 100 168 70 92 WP_166155580.1 hypothetical protein [Neochlamydia sp. AcF84] diamond 141 47 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia sp. AcF84
30519757 30519757 PRJNA529241_P_NODE_11313_length_779_cov_5.913747_g4936_i2 PRJNA529241 11313 779 5.913747 46.06808913 Chlamydiota bacterium 2081524 Bacteria Bacteria 181 2.35e-51   NR NDD59539.1 2081524 g4936 i2 76.5 0.442875481386393 115 25 43.5 1 183 521 67 181 NDD59539.1 hypothetical protein [Chlamydiota bacterium] diamond 345 181 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30614408 30614408 PRJNA529241_P_NODE_135453_length_193_cov_4.153846_g133131_i0 PRJNA529241 135453 193 4.153846 8.01692278 Chlamydia psittaci 83554 Bacteria Bacteria 39.7 0.0392   NR EPJ32152.1 1112244 g133131 i0 83.6 0.854922279792746 55 9 85.5 0 179 15 4 58 EPJ32152.1 hypothetical protein CP061683_2283, partial [Chlamydia psittaci 06-1683] diamond 165 39.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
30993762 30993762 PRJNA529241_P_NODE_14954_length_612_cov_11.481739_g12966_i0 PRJNA529241 14954 612 11.481739 70.26824268 Chlamydiia bacterium 2052156 Bacteria Bacteria 170 1.17e-48   NR MEI8329982.1 2052156 g12966 i0 57.7 0.799019607843137 163 60 76.5 4 607 140 99 259 MEI8329982.1 tRNA(His) guanylyltransferase Thg1 family protein [Chlamydiia bacterium] diamond 489 170 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
31626062 31626062 PRJNA529241_P_NODE_457256_length_154_cov_2.333333_g454934_i0 PRJNA529241 457256 154 2.333333 3.59333282 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 92.4 1.28e-20   NR MDP1880795.1 2052176 g454934 i0 86.3 0.993506493506494 51 7 99.4 0 153 1 220 270 MDP1880795.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein [Parachlamydiaceae bacterium] diamond 153 92.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
31735993 31735993 PRJNA529241_P_NODE_213737_length_173_cov_5.573529_g211415_i0 PRJNA529241 213737 173 5.573529 9.64220517 Bacteria 2 Bacteria Bacteria 56.6 1.83e-7   NR CQB87362.1 813 g211415 i0 100 1.73410404624277 25 0 43.4 0 98 172 515 539 CQB87362.1 Glutamine-dependent NAD(+) synthetase [Chlamydia trachomatis] diamond 300 56.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
32005753 32005753 PRJNA529241_P_NODE_346978_length_173_cov_2.897059_g344656_i0 PRJNA529241 346978 173 2.897059 5.01191207 Chlamydia trachomatis 813 Bacteria Bacteria 45.8 0.00119   NR CRH64103.1 813 g344656 i0 91.7 0.416184971098266 24 2 41.6 0 75 4 333 356 CRH64103.1 Internalin-A precursor [Chlamydia trachomatis] diamond 72 45.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
32020930 32020930 PRJNA529241_P_NODE_387638_length_173_cov_2.463235_g385316_i0 PRJNA529241 387638 173 2.463235 4.26139655 Parachlamydia 83551 Bacteria Bacteria 60.5 6.47e-9   NR MCE5315994.1 2052048 g385316 i0 53.5 9.88439306358381 71 19 98.8 1 2 172 154 224 MCE5315994.1 sodium:solute symporter family protein [Parachlamydia sp.] diamond 1710 60.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.
32132510 32132510 PRJNA529241_P_NODE_9678_length_897_cov_6.177907_g4936_i1 PRJNA529241 9678 897 6.177907 55.41582579 Chlamydiota bacterium 2081524 Bacteria Bacteria 182 5.84e-51   NR NDD59539.1 2081524 g4936 i1 76.5 0.384615384615385 115 25 37.8 1 33 371 67 181 NDD59539.1 hypothetical protein [Chlamydiota bacterium] diamond 345 182 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
32575505 32575505 PRJNA529241_P_NODE_7979_length_1064_cov_8.801363_g6721_i0 PRJNA529241 7979 1064 8.801363 93.64650232 Chlamydiales bacterium 2047757 Bacteria Bacteria 135 6.919999999999999e-34   NR MCE5293500.1 2047757 g6721 i0 65.2 0.25093984962406 89 31 25.1 0 146 412 156 244 MCE5293500.1 hypothetical protein [Chlamydiales bacterium] diamond 267 135 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;