RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA529241", tax_phylum = "Cercozoa" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA529241 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
502116 502116 PRJNA529241_P_NODE_57381_length_273_cov_1.427966_g55059_i0 PRJNA529241 57381 273 1.427966 3.89834718 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 257 4.9500000000000006e-64   NTclustered gi|756877536|ref|NC_026310.1| 372086 g55059 i0 84.211 0.974358974358974 266 40 97 2 1 264 25348 25613 Paracercomonas marina strain ATCC 50344 mitochondrion, complete genome blastn 266 257 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
1774108 1774108 PRJNA529241_P_NODE_169062_length_177_cov_1.942857_g166740_i0 PRJNA529241 169062 177 1.942857 3.43885689 Guttulinopsis rogosa 2231170 SAR_Eukaryotes SAR_Eukaryotes 283 4.87e-72   NTclustered gi|1402550485|gb|MH488771.1| 2231170 g166740 i0 95.48 8.93785310734463 177 8 100 0 1 177 688 864 Guttulinopsis rogosa isolate ATCC 50030 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 1582 283 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Guttulinopsis Guttulinopsis rogosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;