RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA529241", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA529241 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10702580 10702580 PRJNA529241_P_NODE_143669_length_189_cov_1.796053_g141347_i0 PRJNA529241 143669 189 1.796053 3.39454017 Gammaretrovirus murleu 3428959 Viruses Viruses 311 2.42e-80   NTclustered gi|18448741|gb|AF462057.1| 11801 g141347 i0 96.296 99.989417989418 189 7 100 0 1 189 3090 2902 Moloney murine leukemia virus neuropathogenic variant ts1-92b, complete genome blastn 18898 311 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
15802875 15802875 PRJNA529241_P_NODE_352273_length_173_cov_2.838235_g349951_i0 PRJNA529241 352273 173 2.838235 4.91014655 Citrus blight-associated pararetrovirus 2689385 Viruses Viruses 113 6.5700000000000005e-21   NTclustered gi|2288530032|gb|MZ330114.1| 2689385 g349951 i0 93.421 2.19653179190751 76 5 44 0 98 173 4765 4690 Citrus blight-associated pararetrovirus isolate TL 101/CBaPRV, complete genome blastn 380 113 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Citrus blight-associated pararetrovirus
20242570 20242570 PRJNA529241_P_NODE_467696_length_152_cov_2.939130_g465374_i0 PRJNA529241 467696 152 2.93913 4.4674776 root 1 Root_unresolved Root_unresolved 143 7.17e-30   NTclustered gi|1401818413|gb|MH054729.1| 11676 g465374 i0 100 96.6315789473684 77 0 100 0 1 77 1352 1276 HIV-1 isolate 92LKH10-15935 from South Korea pol protein (pol) gene, partial cds blastn 14688 143 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
24068680 24068680 PRJNA529241_P_NODE_78539_length_241_cov_2.960784_g76217_i0 PRJNA529241 78539 241 2.960784 7.13548944 Viruses 10239 Viruses Viruses 446 8.519999999999999e-121   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g76217 i0 100 99.9668049792531 241 0 100 0 1 241 3666 3906 Moloney murine leukemia virus, complete genome blastn 24092 446 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;